Fwd: PNAS Early Edition for 19 Nov 2014

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Subject: PNAS Early Edition for 19 Nov 2014
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Proceedings of the National Academy of Sciences Early Edition articles for 19 November 2014 Commentaries IL-27 and the generation of CD8+ T-cell responses to peptide vaccines Timothy N. J. Bullock Freezing viruses in time Edward C. Holmes More to hydrothermal iron input than meets the eye Alessandro Tagliabue Perspectives Evolutionary cell biology: Two origins, one objective Michael Lynch, Mark C. Field, Holly V. Goodson, Harmit S. Malik, José B. Pereira-Leal, David S. Roos, Aaron P. Turkewitz, and Shelley Sazer Dealing with femtorisks in international relations Aaron Benjamin Frank, Margaret Goud Collins, Simon A. Levin, Andrew W. Lo, Joshua Ramo, Ulf Dieckmann, Victor Kremenyuk, Arkady Kryazhimskiy, JoAnne Linnerooth-Bayer, Ben Ramalingam, J. Stapleton Roy, Donald G. Saari, Stefan Thurner, and Detlof von Winterfeldt Meal frequency and timing in health and disease Mark P. Mattson, David B. Allison, Luigi Fontana, Michelle Harvie, Valter D. Longo, Willy J. Malaisse, Michael Mosley, Lucia Notterpek, Eric Ravussin, Frank A. J. L. Scheer, Thomas N. Seyfried, Krista A. Varady, and Satchidananda Panda Epigenetic Changes in the Developing Brain: Effects on Behavior Sackler Colloquium (free online) Biological Sciences — Genetics Genomic imprinting, action, and interaction of maternal and fetal genomes Eric B. Keverne Physical Sciences Applied Physical Sciences Instability-induced pattern formation of photoactivated functional polymers Henning Galinski, Antonio Ambrosio, Pasqualino Maddalena, Iwan Schenker, Ralph Spolenak, and Federico Capasso Charging-free electrochemical system for harvesting low-grade thermal energy Yuan Yang, Seok Woo Lee, Hadi Ghasemi, James Loomis, Xiaobo Li, Daniel Kraemer, Guangyuan Zheng, Yi Cui, and Gang Chen Chemistry Orientation of aromatic residues in amyloid cores: Structural insights into prion fiber diversity Anna Reymer, Kendra K. Frederick, Sandra Rocha, Tamás Beke-Somfai, Catherine C. Kitts, Susan Lindquist, and Bengt Nordén Graphene cover-promoted metal-catalyzed reactions Yunxi Yao, Qiang Fu, Y. Y. Zhang, Xuefei Weng, Huan Li, Mingshu Chen, Li Jin, Aiyi Dong, Rentao Mu, Peng Jiang, Li Liu, Hendrik Bluhm, Zhi Liu, S. B. Zhang, and Xinhe Bao Earth, Atmospheric, and Planetary Sciences Silicon isotopes in angrites and volatile loss in planetesimals Emily A. Pringle, Frédéric Moynier, Paul S. Savage, James Badro, and Jean-Alix Barrat Transition from geostrophic turbulence to inertia–gravity waves in the atmospheric energy spectrum  Jörn Callies, Raffaele Ferrari, and Oliver Bühler Orbital apocenter is not a sufficient condition for HST/STIS detection of Europa's water vapor aurora  Lorenz Roth, Kurt D. Retherford, Joachim Saur, Darrell F. Strobel, Paul D. Feldman, Melissa A. McGrath, and Francis Nimmo Earthquake and tsunami forecasts: Relation of slow slip events to subsequent earthquake rupture  Timothy H. Dixon, Yan Jiang, Rocco Malservisi, Robert McCaffrey, Nicholas Voss, Marino Protti, and Victor Gonzalez Environmental Sciences Rapid climate change did not cause population collapse at the end of the European Bronze Age Ian Armit, Graeme T. Swindles, Katharina Becker, Gill Plunkett, and Maarten Blaauw Physics Modulation of DNA loop lifetimes by the free energy of loop formation Yi-Ju Chen, Stephanie Johnson, Peter Mulligan, Andrew J. Spakowitz, and Rob Phillips Force distribution affects vibrational properties in hard-sphere glasses Eric DeGiuli, Edan Lerner, Carolina Brito, and Matthieu Wyart A model for the generation and interconversion of ER morphologies Tom Shemesh, Robin W. Klemm, Fabian B. Romano, Songyu Wang, Joshua Vaughan, Xiaowei Zhuang, Hanna Tukachinsky, Michael M. Kozlov, and Tom A. Rapoport Revealing an unusual transparent phase of superhard iron tetraboride under high pressure Komsilp Kotmool, Thanayut Kaewmaraya, Sudip Chakraborty, Jonas Anversa, Thiti Bovornratanaraks, Wei Luo, Huiyang Gou, Paulo Cesar Piquini, Tae Won Kang, Ho-kwang Mao, and Rajeev Ahuja Social Sciences Anthropology Rapid climate change did not cause population collapse at the end of the European Bronze Age Ian Armit, Graeme T. Swindles, Katharina Becker, Gill Plunkett, and Maarten Blaauw Economic Sciences Ethnic diversity deflates price bubbles  Sheen S. Levine, Evan P. Apfelbaum, Mark Bernard, Valerie L. Bartelt, Edward J. Zajac, and David Stark Psychological and Cognitive Sciences The association between discontinuing hormonal contraceptives and wives' marital satisfaction depends on husbands' facial attractiveness V. Michelle Russell, James K. McNulty, Levi R. Baker, and Andrea L. Meltzer People search for meaning when they approach a new decade in chronological age Adam L. Alter and Hal E. Hershfield Harm to others outweighs harm to self in moral decision making  Molly J. Crockett, Zeb Kurth-Nelson, Jenifer Z. Siegel, Peter Dayan, and Raymond J. Dolan Credit scores, cardiovascular disease risk, and human capital  Salomon Israel, Avshalom Caspi, Daniel W. Belsky, HonaLee Harrington, Sean Hogan, Renate Houts, Sandhya Ramrakha, Seth Sanders, Richie Poulton, and Terrie E. Moffitt Rethinking natural altruism: Simple reciprocal interactions trigger children's benevolence Rodolfo Cortes Barragan and Carol S. Dweck Mapping the unconscious maintenance of a lost first language Lara J. Pierce, Denise Klein, Jen-Kai Chen, Audrey Delcenserie, and Fred Genesee Social Sciences Static network structure can stabilize human cooperation  David G. Rand, Martin A. Nowak, James H. Fowler, and Nicholas A. Christakis Biological Sciences Applied Biological Sciences An engineered affibody molecule with pH-dependent binding to FcRn mediates extended circulatory half-life of a fusion protein Johan Seijsing, Malin Lindborg, Ingmarie Höidén-Guthenberg, Heiko Bönisch, Elin Guneriusson, Fredrik Y. Frejd, Lars Abrahmsén, Caroline Ekblad, John Löfblom, Mathias Uhlén, and Torbjörn Gräslund G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments Pavel Ivanov, Elizabeth O'Day, Mohamed M. Emara, Gerhard Wagner, Judy Lieberman, and Paul Anderson NanoFlares for the detection, isolation, and culture of live tumor cells from human blood Tiffany L. Halo, Kaylin M. McMahon, Nicholas L. Angeloni, Yilin Xu, Wei Wang, Alyssa B. Chinen, Dmitry Malin, Elena Strekalova, Vincent L. Cryns, Chonghui Cheng, Chad A. Mirkin, and C. Shad Thaxton Aptamer photoregulation in vivo Lele Li, Rong Tong, Hunghao Chu, Weiping Wang, Robert Langer, and Daniel S. Kohane Biochemistry Natural low-molecular mass organic compounds with oxidase activity as organocatalysts Tatsuya Nishiyama, Yoshiteru Hashimoto, Hitoshi Kusakabe, Takuto Kumano, and Michihiko Kobayashi RecQ helicase and RecJ nuclease provide complementary functions to resect DNA for homologous recombination Katsumi Morimatsu and Stephen C. Kowalczykowski Structure of the meningococcal vaccine antigen NadA and epitope mapping of a bactericidal antibody  Enrico Malito, Marco Biancucci, Agnese Faleri, Ilaria Ferlenghi, Maria Scarselli, Giulietta Maruggi, Paola Lo Surdo, Daniele Veggi, Alessia Liguori, Laura Santini, Isabella Bertoldi, Roberto Petracca, Sara Marchi, Giacomo Romagnoli, Elena Cartocci, Irene Vercellino, Silvana Savino, Glen Spraggon, Nathalie Norais, Mariagrazia Pizza, Rino Rappuoli, Vega Masignani, and Matthew James Bottomley Structural model of an mRNA in complex with the bacterial chaperone Hfq Yi Peng, Joseph E. Curtis, Xianyang Fang, and Sarah A. Woodson Activity-regulating structural changes and autoantibody epitopes in transglutaminase 2 assessed by hydrogen/deuterium exchange  Rasmus Iversen, Simon Mysling, Kathrin Hnida, Thomas J. D. Jørgensen, and Ludvig M. Sollid Combinatorial regulation of a signal-dependent activator by phosphorylation and acetylation Jose C. Paz, Sang-Ho Park, Naomi Phillips, Shigenobu Matsumura, Wen-Wei Tsai, Lawryn Kasper, Paul K. Brindle, Guangtao Zhang, Ming-Ming Zhou, Peter E. Wright, and Marc Montminy Biophysics and Computational Biology Modulation of DNA loop lifetimes by the free energy of loop formation Yi-Ju Chen, Stephanie Johnson, Peter Mulligan, Andrew J. Spakowitz, and Rob Phillips Structures of protective antibodies reveal sites of vulnerability on Ebola virus Charles D. Murin, Marnie L. Fusco, Zachary A. Bornholdt, Xiangguo Qiu, Gene G. Olinger, Larry Zeitlin, Gary P. Kobinger, Andrew B. Ward, and Erica Ollmann Saphire Fibroblasts probe substrate rigidity with filopodia extensions before occupying an area Stephanie Wong, Wei-Hui Guo, and Yu-Li Wang Orientation of aromatic residues in amyloid cores: Structural insights into prion fiber diversity Anna Reymer, Kendra K. Frederick, Sandra Rocha, Tamás Beke-Somfai, Catherine C. Kitts, Susan Lindquist, and Bengt Nordén Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry Albert Konijnenberg, Duygu Yilmaz, Helgi I. Ingólfsson, Anna Dimitrova, Siewert J. Marrink, Zhuolun Li, Catherine Vénien-Bryan, Frank Sobott, and Armağan Koçer Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging Jérôme Boulanger, Charles Gueudry, Daniel Münch, Bertrand Cinquin, Perrine Paul-Gilloteaux, Sabine Bardin, Christophe Guérin, Fabrice Senger, Laurent Blanchoin, and Jean Salamero Relating influenza virus membrane fusion kinetics to stoichiometry of neutralizing antibodies at the single-particle level Jason J. Otterstrom, Boerries Brandenburg, Martin H. Koldijk, Jarek Juraszek, Chan Tang, Samaneh Mashaghi, Ted Kwaks, Jaap Goudsmit, Ronald Vogels, Robert H. E. Friesen, and Antoine M. van Oijen Cell Biology Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent Twana Alkasalias, Emilie Flaberg, Vladimir Kashuba, Andrey Alexeyenko, Tatiana Pavlova, Andrii Savchenko, Laszlo Szekely, George Klein, and Hayrettin Guven A model for the generation and interconversion of ER morphologies Tom Shemesh, Robin W. Klemm, Fabian B. Romano, Songyu Wang, Joshua Vaughan, Xiaowei Zhuang, Hanna Tukachinsky, Michael M. Kozlov, and Tom A. Rapoport Developmental Biology Neural precursor-specific expression of multiple Drosophila genes is driven by dual enhancer modules with overlapping function Steven W. Miller, Mark Rebeiz, Jenny E. Atanasov, and James W. Posakony Environmental Sciences The commonly used antimicrobial additive triclosan is a liver tumor promoter Mei-Fei Yueh, Koji Taniguchi, Shujuan Chen, Ronald M. Evans, Bruce D. Hammock, Michael Karin, and Robert H. Tukey Evolution Static network structure can stabilize human cooperation  David G. Rand, Martin A. Nowak, James H. Fowler, and Nicholas A. Christakis New insight into the evolution of the vertebrate respiratory system and the discovery of unidirectional airflow in iguana lungs Robert L. Cieri, Brent A. Craven, Emma R. Schachner, and C. G. Farmer Reducing the genetic code induces massive rearrangement of the proteome Patrick O'Donoghue, Laure Prat, Martin Kucklick, Johannes G. Schäfer, Katharina Riedel, Jesse Rinehart, Dieter Söll, and Ilka U. Heinemann Termite queens close the sperm gates of eggs to switch from sexual to asexual reproduction Toshihisa Yashiro and Kenji Matsuura Genetics Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea Lukas Chavez, Yun Huang, Khai Luong, Suneet Agarwal, Lakshminarayan M. Iyer, William A. Pastor, Virginia K. Hench, Sylvia A. Frazier-Bowers, Evgenia Korol, Shuo Liu, Mamta Tahiliani, Yinsheng Wang, Tyson A. Clark, Jonas Korlach, Patricia J. Pukkila, L. Aravind, and Anjana Rao High-throughput optical quantification of mechanosensory habituation reveals neurons encoding memory in Caenorhabditis elegans Takuma Sugi, Yasuko Ohtani, Yuta Kumiya, Ryuji Igarashi, and Masahiro Shirakawa Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in Schmidtea mediterranea  Youbin Xiang, Danny E. Miller, Eric J. Ross, Alejandro Sánchez Alvarado, and R. Scott Hawley Immunology and Inflammation Optimal T-cell receptor affinity for inducing autoimmunity Sabrina Koehli, Dieter Naeher, Virginie Galati-Fournier, Dietmar Zehn, and Ed Palmer Basophil-mediated protection against gastrointestinal helminths requires IgE-induced cytokine secretion Christian Schwartz, Adriana Turqueti-Neves, Susanne Hartmann, Philipp Yu, Falk Nimmerjahn, and David Voehringer Caspase-1 autoproteolysis is differentially required for NLRP1b and NLRP3 inflammasome function  Baptiste Guey, Mélanie Bodnar, Serge N. Manié, Aubry Tardivel, and Virginie Petrilli APE1 is dispensable for S-region cleavage but required for its repair in class switch recombination Jianliang Xu, Afzal Husain, Wenjun Hu, Tasuku Honjo, and Maki Kobayashi Medical Sciences Ovarian cancer stem cells express ROR1, which can be targeted for anti–cancer-stem-cell therapy  Suping Zhang, Bing Cui, Hsien Lai, Grace Liu, Emanuela M. Ghia, George F. Widhopf II, Zhuhong Zhang, Christina C. N. Wu, Liguang Chen, Rongrong Wu, Richard Schwab, Dennis A. Carson, and Thomas J. Kipps Agonists of growth hormone-releasing hormone stimulate self-renewal of cardiac stem cells and promote their survival Victoria Florea, Sonia S. Majid, Rosemeire M. Kanashiro-Takeuchi, Ren-Zhi Cai, Norman L. Block, Andrew V. Schally, Joshua M. Hare, and Claudia O. Rodrigues Melanopsin mediates light-dependent relaxation in blood vessels Gautam Sikka, G. Patrick Hussmann, Deepesh Pandey, Suyi Cao, Daijiro Hori, Jong Taek Park, Jochen Steppan, Jae Hyung Kim, Viachaslau Barodka, Allen C. Myers, Lakshmi Santhanam, Daniel Nyhan, Marc K. Halushka, Raymond C. Koehler, Solomon H. Snyder, Larissa A. Shimoda, and Dan E. Berkowitz Tubulin hyperacetylation is adaptive in cardiac proteotoxicity by promoting autophagy Patrick M. McLendon, Bradley S. Ferguson, Hanna Osinska, Md. Shenuarin Bhuiyan, Jeanne James, Timothy A. McKinsey, and Jeffrey Robbins Disruption of Lrp4 function by genetic deletion or pharmacological blockade increases bone mass and serum sclerostin levels  Ming-Kang Chang, Ina Kramer, Thomas Huber, Bernd Kinzel, Sabine Guth-Gundel, Olivier Leupin, and Michaela Kneissel Young capillary vessels rejuvenate aged pancreatic islets Joana Almaça, Judith Molina, Rafael Arrojo e Drigo, Midhat H. Abdulreda, Won Bae Jeon, Per-Olof Berggren, Alejandro Caicedo, and Hong Gil Nam VEGF-B selectively regenerates injured peripheral neurons and restores sensory and trophic functions  Victor H. Guaiquil, Zan Pan, Natalia Karagianni, Shima Fukuoka, Gemstonn Alegre, and Mark I. Rosenblatt Microbiology Densovirus associated with sea-star wasting disease and mass mortality  Ian Hewson, Jason B. Button, Brent M. Gudenkauf, Benjamin Miner, Alisa L. Newton, Joseph K. Gaydos, Janna Wynne, Cathy L. Groves, Gordon Hendler, Michael Murray, Steven Fradkin, Mya Breitbart, Elizabeth Fahsbender, Kevin D. Lafferty, A. Marm Kilpatrick, C. Melissa Miner, Peter Raimondi, Lesanna Lahner, Carolyn S. Friedman, Stephen Daniels, Martin Haulena, Jeffrey Marliave, Colleen A. Burge, Morgan E. Eisenlord, and C. Drew Harvell Global discovery of colonization determinants in the squid symbiont Vibrio fischeri  John F. Brooks II, Mattias C. Gyllborg, David C. Cronin, Sarah J. Quillin, Celeste A. Mallama, Randi Foxall, Cheryl Whistler, Andrew L. Goodman, and Mark J. Mandel Complex two-component signaling regulates the general stress response in Alphaproteobacteria Andreas Kaczmarczyk, Ramon Hochstrasser, Julia A. Vorholt, and Anne Francez-Charlot Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein Jianbo Chen, David Grunwald, Luca Sardo, Andrea Galli, Sergey Plisov, Olga A. Nikolaitchik, De Chen, Stephen Lockett, Daniel R. Larson, Vinay K. Pathak, and Wei-Shau Hu Neuroscience The vertical occipital fasciculus: A century of controversy resolved by in vivo measurements Jason D. Yeatman, Kevin S. Weiner, Franco Pestilli, Ariel Rokem, Aviv Mezer, and Brian A. Wandell α2A adrenergic receptor promotes amyloidogenesis through disrupting APP-SorLA interaction Yunjia Chen, Yin Peng, Pulin Che, Mary Gannon, Yin Liu, Ling Li, Guojun Bu, Thomas van Groen, Kai Jiao, and Qin Wang Topoisomerase 1 inhibition reversibly impairs synaptic function Angela M. Mabb, Paul H. M. Kullmann, Margaret A. Twomey, Jayalakshmi Miriyala, Benjamin D. Philpot, and Mark J. Zylka Network dynamics of the brain and influence of the epileptic seizure onset zone Samuel P. Burns, Sabato Santaniello, Robert B. Yaffe, Christophe C. Jouny, Nathan E. Crone, Gregory K. Bergey, William S. Anderson, and Sridevi V. Sarma Physiology Syndecan 4 is required for endothelial alignment in flow and atheroprotective signaling Nicolas Baeyens, Mary Jo Mulligan-Kehoe, Federico Corti, David D. Simon, Tyler D. Ross, John M. Rhodes, Thomas Z. Wang, Cecile O. Mejean, Michael Simons, Jay Humphrey, and Martin A. Schwartz Impact of circadian misalignment on energy metabolism during simulated nightshift work Andrew W. McHill, Edward L. Melanson, Janine Higgins, Elizabeth Connick, Thomas M. Moehlman, Ellen R. Stothard, and Kenneth P. Wright Jr. Psychological and Cognitive Sciences Ethnic diversity deflates price bubbles  Sheen S. Levine, Evan P. Apfelbaum, Mark Bernard, Valerie L. Bartelt, Edward J. Zajac, and David Stark Reward eliminates retrieval-induced forgetting Hisato Imai, Dongho Kim, Yuka Sasaki, and Takeo Watanabe People search for meaning when they approach a new decade in chronological age Adam L. Alter and Hal E. Hershfield Harm to others outweighs harm to self in moral decision making  Molly J. Crockett, Zeb Kurth-Nelson, Jenifer Z. Siegel, Peter Dayan, and Raymond J. Dolan Mapping the unconscious maintenance of a lost first language Lara J. Pierce, Denise Klein, Jen-Kai Chen, Audrey Delcenserie, and Fred Genesee Systems Biology Noise decomposition of intracellular biochemical signaling networks using nonequivalent reporters Alex Rhee, Raymond Cheong, and Andre Levchenko Corrections Correction for Gao et al., Evidence for multiple roles for grainyheadlike 2 in the establishment and maintenance of human mucociliary airway epithelium Correction for Jung et al., Dynamic modulation of ANO1/TMEM16A HCO3− permeability by Ca2+/calmodulin Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) * 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2014 by the National Academy of Sciences