Fwd: PNAS Table of Contents for 18 November 2014; Vol. 111, No. 46

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Proceedings of the National Academy of Sciences 18 November 2014; Vol. 111, No. 46 This Week in PNAS In This Issue Letters (Online Only) Phosphorus is a key component of the resource demands for meat, eggs, and dairy production in the United States Geneviève S. Metson, Val H. Smith, Dana J. Cordell, David A. Vaccari, James J. Elser, and Elena M. Bennett Reply to Metson et al.: The importance of phosphorus perturbations Gidon Eshel, Alon Shepon, Tamar Makov, and Ron Milo Skeletal muscle-induced hypoglycemia risk, not life history energy trade-off, links high child brain glucose use to slow body growth John R. Skoyles Reply to Skoyles: Decline in growth rate, not muscle mass, predicts the human childhood peak in brain metabolism Christopher W. Kuzawa, Harry T. Chugani, Lawrence I. Grossman, Leonard Lipovich, Otto Muzik, Patrick R. Hof, Derek E. Wildman, Chet C. Sherwood, William R. Leonard, and Nicholas Lange Inner Workings Inner Workings: Story of an empire encased in tree rings  Danielle Venton An over-the-shoulder look at scientists at work. QnAs QnAs with Mary C. Waters Tinsley H. Davis Retrospective Gil Ashwell, 1916–2014 Michael M. Gottesman, John A. Hanover, and William Jakoby Profile Profile of Yigong Shi Tinsley H. Davis Commentaries Putting things in order Ning Sun and Hongyu Zhao The Runt-related transcription factor 1 in prostate cancer-associated fibroblasts Hilary A. Coller Trait-based extinction catches the Red Queen napping during the Cambrian P. David Polly Epstein–Barr virus replicating in epithelial cells Lindsey M. Hutt-Fletcher PNAS Plus Significance Statements PNAS Plus Significance Statements Brief statements written by the authors about the significance of their papers. Physical Sciences Applied Mathematics Deciding whether follow-up studies have replicated findings in a preliminary large-scale omics study  Ruth Heller, Marina Bogomolov, and Yoav Benjamini Applied Physical Sciences Acceleration of evolutionary spread by long-range dispersal  Oskar Hallatschek and Daniel S. Fisher Splitting, linking, knotting, and solitonic escape of topological defects in nematic drops with handles Mykola Tasinkevych, Michael G. Campbell, and Ivan I. Smalyukh Chemistry Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome  Nelson B. Olivier, Roger B. Altman, Jonas Noeske, Gregory S. Basarab, Erin Code, Andrew D. Ferguson, Ning Gao, Jian Huang, Manuel F. Juette, Stephania Livchak, Matthew D. Miller, D. Bryan Prince, Jamie H. D. Cate, Ed T. Buurman, and Scott C. Blanchard Copper is an endogenous modulator of neural circuit spontaneous activity Sheel C. Dodani, Alana Firl, Jefferson Chan, Christine I. Nam, Allegra T. Aron, Carl S. Onak, Karla M. Ramos-Torres, Jaeho Paek, Corey M. Webster, Marla B. Feller, and Christopher J. Chang Amino acid modified Ni catalyst exhibits reversible H2 oxidation/production over a broad pH range at elevated temperatures Arnab Dutta, Daniel L. DuBois, John A. S. Roberts, and Wendy J. Shaw Earth, Atmospheric, and Planetary Sciences Late Miocene episodic lakes in the arid Tarim Basin, western China Weiguo Liu, Zhonghui Liu, Zhisheng An, Jimin Sun, Hong Chang, Ning Wang, Jibao Dong, and Huanye Wang Far-infrared surface emissivity and climate  Daniel R. Feldman, William D. Collins, Robert Pincus, Xianglei Huang, and Xiuhong Chen Basin-scale estimates of pelagic and coral reef calcification in the Red Sea and Western Indian Ocean  Zvi Steiner, Jonathan Erez, Aldo Shemesh, Ruth Yam, Amitai Katz, and Boaz Lazar Trait-based diversification shifts reflect differential extinction among fossil taxa  Peter J. Wagner and George F. Estabrook Engineering Asymmetric hindwing foldings in rove beetles Kazuya Saito, Shuhei Yamamoto, Munetoshi Maruyama, and Yoji Okabe Simple battery armor to protect against gastrointestinal injury from accidental ingestion Bryan Laulicht, Giovanni Traverso, Vikram Deshpande, Robert Langer, and Jeffrey M. Karp Physics Field-induced superconducting phase of FeSe in the BCS-BEC cross-over Shigeru Kasahara, Tatsuya Watashige, Tetsuo Hanaguri, Yuhki Kohsaka, Takuya Yamashita, Yusuke Shimoyama, Yuta Mizukami, Ryota Endo, Hiroaki Ikeda, Kazushi Aoyama, Taichi Terashima, Shinya Uji, Thomas Wolf, Hilbert von Löhneysen, Takasada Shibauchi, and Yuji Matsuda Criterion for stability of Goldstone modes and Fermi liquid behavior in a metal with broken symmetry Haruki Watanabe and Ashvin Vishwanath Statistics Gene coexpression measures in large heterogeneous samples using count statistics  Y. X. Rachel Wang, Michael S. Waterman, and Haiyan Huang Sustainability Science Recent climate and air pollution impacts on Indian agriculture  Jennifer Burney and V. Ramanathan Disentangling the effects of CO2 and short-lived climate forcer mitigation  Joeri Rogelj, Michiel Schaeffer, Malte Meinshausen, Drew T. Shindell, William Hare, Zbigniew Klimont, Guus J. M. Velders, Markus Amann, and Hans Joachim Schellnhuber Social Sciences Psychological and Cognitive Sciences Decreased segregation of brain systems across the healthy adult lifespan  Micaela Y. Chan, Denise C. Park, Neil K. Savalia, Steven E. Petersen, and Gagan S. Wig Purpose in life and use of preventive health care services Eric S. Kim, Victor J. Strecher, and Carol D. Ryff Ventromedial prefrontal cortex supports affective future simulation by integrating distributed knowledge Roland G. Benoit, Karl K. Szpunar, and Daniel L. Schacter Social Sciences Role of health in predicting moves to poor neighborhoods among Hurricane Katrina survivors   Mariana C. Arcaya, S. V. Subramanian, Jean E. Rhodes, and Mary C. Waters Cooperation and control in multiplayer social dilemmas  Christian Hilbe, Bin Wu, Arne Traulsen, and Martin A. Nowak Biological Sciences Agricultural Sciences Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice  He Gao, Mingna Jin, Xiao-Ming Zheng, Jun Chen, Dingyang Yuan, Yeyun Xin, Maoqing Wang, Dongyi Huang, Zhe Zhang, Kunneng Zhou, Peike Sheng, Jin Ma, Weiwei Ma, Huafeng Deng, Ling Jiang, Shijia Liu, Haiyang Wang, Chuanyin Wu, Longping Yuan, and Jianmin Wan Anthropology Wild chimpanzees plan their breakfast time, type, and location Karline R. L. Janmaat, Leo Polansky, Simone Dagui Ban, and Christophe Boesch Applied Biological Sciences Asymmetric hindwing foldings in rove beetles Kazuya Saito, Shuhei Yamamoto, Munetoshi Maruyama, and Yoji Okabe Sexual transfer of the steroid hormone 20E induces the postmating switch in Anopheles gambiae  Paolo Gabrieli, Evdoxia G. Kakani, Sara N. Mitchell, Enzo Mameli, Elizabeth J. Want, Ainhoa Mariezcurrena Anton, Aurelio Serrao, Francesco Baldini, and Flaminia Catteruccia Biochemistry Calcium-mediated histone modifications regulate alternative splicing in cardiomyocytes Alok Sharma, Hieu Nguyen, Cuiyu Geng, Melissa N. Hinman, Guangbin Luo, and Hua Lou Differential gradients of interaction affinities drive efficient targeting and recycling in the GET pathway Michael E. Rome, Un Seng Chio, Meera Rao, Harry Gristick, and Shu-ou Shan Liat1, an arginyltransferase-binding protein whose evolution among primates involved changes in the numbers of its 10-residue repeats Christopher S. Brower, Connor E. Rosen, Richard H. Jones, Brandon C. Wadas, Konstantin I. Piatkov, and Alexander Varshavsky Molecular determinants of caspase-9 activation by the Apaf-1 apoptosome   Qi Hu, Di Wu, Wen Chen, Zhen Yan, Chuangye Yan, Tianxi He, Qionglin Liang, and Yigong Shi Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome  Nelson B. Olivier, Roger B. Altman, Jonas Noeske, Gregory S. Basarab, Erin Code, Andrew D. Ferguson, Ning Gao, Jian Huang, Manuel F. Juette, Stephania Livchak, Matthew D. Miller, D. Bryan Prince, Jamie H. D. Cate, Ed T. Buurman, and Scott C. Blanchard Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3 Bei Gong, Minsang Shin, Jiali Sun, Che-Hun Jung, Edward L. Bolt, John van der Oost, and Jeong-Sun Kim c-Abl tyrosine kinase promotes adipocyte differentiation by targeting PPAR-gamma 2 Rom Keshet, Zina Bryansker Kraitshtein, Matan Shanzer, Julia Adler, Nina Reuven, and Yosef Shaul Biophysics and Computational Biology Gene coexpression measures in large heterogeneous samples using count statistics  Y. X. Rachel Wang, Michael S. Waterman, and Haiyan Huang Halorhodopsin pumps Cl– and bacteriorhodopsin pumps protons by a common mechanism that uses conserved electrostatic interactions Yifan Song and M. R. Gunner Cell Biology Long-range enhancer activity determines Myc sensitivity to Notch inhibitors in T cell leukemia Yumi Yashiro-Ohtani, Hongfang Wang, Chongzhi Zang, Kelly L. Arnett, Will Bailis, Yugong Ho, Birgit Knoechel, Claudia Lanauze, Lumena Louis, Katherine S. Forsyth, Sujun Chen, Yoonjie Chung, Jonathan Schug, Gerd A. Blobel, Stephen A. Liebhaber, Bradley E. Bernstein, Stephen C. Blacklow, Xiaole Shirley Liu, Jon C. Aster, and Warren S. Pear Copper is an endogenous modulator of neural circuit spontaneous activity Sheel C. Dodani, Alana Firl, Jefferson Chan, Christine I. Nam, Allegra T. Aron, Carl S. Onak, Karla M. Ramos-Torres, Jaeho Paek, Corey M. Webster, Marla B. Feller, and Christopher J. Chang Microtubules stabilize cell polarity by localizing rear signals Jian Zhang, Wei-Hui Guo, and Yu-Li Wang RUNX1 is essential for mesenchymal stem cell proliferation and myofibroblast differentiation   Woosook Kim, David A. Barron, Rebeca San Martin, Keith S. Chan, Linda L. Tran, Feng Yang, Steven J. Ressler, and David R. Rowley Developmental Biology K-RasV14I recapitulates Noonan syndrome in mice Isabel Hernández-Porras, Salvatore Fabbiano, Alberto J. Schuhmacher, Alexandra Aicher, Marta Cañamero, Juan Antonio Cámara, Lorena Cussó, Manuel Desco, Christopher Heeschen, Francisca Mulero, Xosé R. Bustelo, Carmen Guerra, and Mariano Barbacid Single Lgr5- or Lgr6-expressing taste stem/progenitor cells generate taste bud cells ex vivo Wenwen Ren, Brian C. Lewandowski, Jaime Watson, Eitaro Aihara, Ken Iwatsuki, Alexander A. Bachmanov, Robert F. Margolskee, and Peihua Jiang Sexually dimorphic expression of Mafb regulates masculinization of the embryonic urethral formation  Kentaro Suzuki, Tomokazu Numata, Hiroko Suzuki, Dennis Diana Raga, Lerrie Ann Ipulan, Chikako Yokoyama, Shoko Matsushita, Michito Hamada, Naomi Nakagata, Ryuichi Nishinakamura, Shoen Kume, Satoru Takahashi, and Gen Yamada Environmental Sciences Isotopic signals of summer denitrification in a northern hardwood forested catchment Sarah K. Wexler, Christine L. Goodale, Kevin J. McGuire, Scott W. Bailey, and Peter M. Groffman Evolution Acceleration of evolutionary spread by long-range dispersal  Oskar Hallatschek and Daniel S. Fisher Trait-based diversification shifts reflect differential extinction among fossil taxa  Peter J. Wagner and George F. Estabrook Cooperation and control in multiplayer social dilemmas  Christian Hilbe, Bin Wu, Arne Traulsen, and Martin A. Nowak Rapid changes in the gut microbiome during human evolution Andrew H. Moeller, Yingying Li, Eitel Mpoudi Ngole, Steve Ahuka-Mundeke, Elizabeth V. Lonsdorf, Anne E. Pusey, Martine Peeters, Beatrice H. Hahn, and Howard Ochman Directed evolution of an ultrastable carbonic anhydrase for highly efficient carbon capture from flue gas Oscar Alvizo, Luan J. Nguyen, Christopher K. Savile, Jamie A. Bresson, Satish L. Lakhapatri, Earl O. P. Solis, Richard J. Fox, James M. Broering, Michael R. Benoit, Sabrina A. Zimmerman, Scott J. Novick, Jack Liang, and James J. Lalonde Defense mutualisms enhance plant diversification  Marjorie G. Weber and Anurag A. Agrawal Maximum likelihood inference of reticulate evolutionary histories Yun Yu, Jianrong Dong, Kevin J. Liu, and Luay Nakhleh Genetics Rapid diversification of five Oryza AA genomes associated with rice adaptation  Qun-Jie Zhang, Ting Zhu, En-Hua Xia, Chao Shi, Yun-Long Liu, Yun Zhang, Yuan Liu, Wen-Kai Jiang, You-Jie Zhao, Shu-Yan Mao, Li-Ping Zhang, Hui Huang, Jun-Ying Jiao, Ping-Zhen Xu, Qiu-Yang Yao, Fan-Chun Zeng, Li-Li Yang, Ju Gao, Da-Yun Tao, Yue-Ju Wang, Jeffrey L. Bennetzen, and Li-Zhi Gao Completion of DNA replication in Escherichia coli Brian M. Wendel, Charmain T. Courcelle, and Justin Courcelle siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster  Debashish U. Menon, Cristian Coarfa, Weimin Xiao, Preethi H. Gunaratne, and Victoria H. Meller Immunology and Inflammation Signaling pathways activated by a protease allergen in basophils Rachel K. Rosenstein, Jelena S. Bezbradica, Shuang Yu, and Ruslan Medzhitov Single-cell mass cytometry of TCR signaling: Amplification of small initial differences results in low ERK activation in NOD mice Michael Mingueneau, Smita Krishnaswamy, Matthew H. Spitzer, Sean C. Bendall, Erica L. Stone, Stephen M. Hedrick, Dana Pe'er, Diane Mathis, Garry P. Nolan, and Christophe Benoist IL-27 is required for shaping the magnitude, affinity distribution, and memory of T cells responding to subunit immunization Nathan D. Pennock, Laurent Gapin, and Ross M. Kedl Stable expression and function of the inositol 1,4,5-triphosphate receptor requires palmitoylation by a DHHC6/selenoprotein K complex Gregory J. Fredericks, FuKun W. Hoffmann, Aaron H. Rose, Hanna J. Osterheld, Franz M. Hess, Frederic Mercier, and Peter R. Hoffmann EGR2 is critical for peripheral naïve T-cell differentiation and the T-cell response to influenza Ning Du, Hyokjoon Kwon, Peng Li, Erin E. West, Jangsuk Oh, Wei Liao, Zuxi Yu, Min Ren, and Warren J. Leonard Medical Sciences Excess cholesterol induces mouse egg activation and may cause female infertility Ayce Yesilaltay, Gregoriy A. Dokshin, Dolores Busso, Li Wang, Dalia Galiani, Tony Chavarria, Eliza Vasile, Linda Quilaqueo, Juan Andrés Orellana, Dalia Walzer, Ruth Shalgi, Nava Dekel, David F. Albertini, Attilio Rigotti, David C. Page, and Monty Krieger Simple battery armor to protect against gastrointestinal injury from accidental ingestion Bryan Laulicht, Giovanni Traverso, Vikram Deshpande, Robert Langer, and Jeffrey M. Karp Cerebral small vessel disease-related protease HtrA1 processes latent TGF-β binding protein 1 and facilitates TGF-β signaling Nathalie Beaufort, Eva Scharrer, Elisabeth Kremmer, Vanda Lux, Michael Ehrmann, Robert Huber, Henry Houlden, David Werring, Christof Haffner, and Martin Dichgans Osteoblast regulation via ligand-activated nuclear trafficking of the oxytocin receptor Adriana Di Benedetto, Li Sun, Carlo G. Zambonin, Roberto Tamma, Beatrice Nico, Cosima D. Calvano, Graziana Colaianni, Yaoting Ji, Giorgio Mori, Maria Grano, Ping Lu, Silvia Colucci, Tony Yuen, Maria I. New, Alberta Zallone, and Mone Zaidi Genetic activation of pyruvate dehydrogenase alters oxidative substrate selection to induce skeletal muscle insulin resistance  Yasmeen Rahimi, João-Paulo G. Camporez, Max C. Petersen, Dominik Pesta, Rachel J. Perry, Michael J. Jurczak, Gary W. Cline, and Gerald I. Shulman Sex disparity in colonic adenomagenesis involves promotion by male hormones, not protection by female hormones  James M. Amos-Landgraf, Jarom Heijmans, Mattheus C. B. Wielenga, Elisa Dunkin, Kathy J. Krentz, Linda Clipson, Antwan G. Ederveen, Patrick G. Groothuis, Sietse Mosselman, Vanesa Muncan, Daniel W. Hommes, Alexandra Shedlovsky, William F. Dove, and Gijs R. van den Brink BID mediates selective killing of APC-deficient cells in intestinal tumor suppression by nonsteroidal antiinflammatory drugs Brian Leibowitz, Wei Qiu, Monica E. Buchanan, Fangdong Zou, Philip Vernon, Mary P. Moyer, Xiao-Ming Yin, Robert E. Schoen, Jian Yu, and Lin Zhang Maresin 1 biosynthesis during platelet–neutrophil interactions is organ-protective Raja-Elie E. Abdulnour, Jesmond Dalli, Jennifer K. Colby, Nandini Krishnamoorthy, Jack Y. Timmons, Sook Hwa Tan, Romain A. Colas, Nicos A. Petasis, Charles N. Serhan, and Bruce D. Levy Forward genetic screens in mice uncover mediators and suppressors of metastatic reactivation Hua Gao, Goutam Chakraborty, Ai Ping Lee-Lim, Konstantinos J. Mavrakis, Hans-Guido Wendel, and Filippo G. Giancotti Bap1 is essential for kidney function and cooperates with Vhl in renal tumorigenesis  Shan-Shan Wang, Yi-Feng Gu, Nicholas Wolff, Karoliina Stefanius, Alana Christie, Anwesha Dey, Robert E. Hammer, Xian-Jin Xie, Dinesh Rakheja, Ivan Pedrosa, Thomas Carroll, Renée M. McKay, Payal Kapur, and James Brugarolas Microbiology Metabolic sensor governing bacterial virulence in Staphylococcus aureus Yue Ding, Xing Liu, Feifei Chen, Hongxia Di, Bin Xu, Lu Zhou, Xin Deng, Min Wu, Cai-Guang Yang, and Lefu Lan Cells infected with herpes simplex virus 1 export to uninfected cells exosomes containing STING, viral mRNAs, and microRNAs Maria Kalamvoki, Te Du, and Bernard Roizman Efficient replication of Epstein–Barr virus in stratified epithelium in vitro  Rachel M. Temple, Junjia Zhu, Lynn Budgeon, Neil David Christensen, Craig Meyers, and Clare E. Sample Neuroscience Decreased segregation of brain systems across the healthy adult lifespan  Micaela Y. Chan, Denise C. Park, Neil K. Savalia, Steven E. Petersen, and Gagan S. Wig Cannabinoid CB2 receptors modulate midbrain dopamine neuronal activity and dopamine-related behavior in mice  Hai-Ying Zhang, Ming Gao, Qing-Rong Liu, Guo-Hua Bi, Xia Li, Hong-Ju Yang, Eliot L. Gardner, Jie Wu, and Zheng-Xiong Xi Ventromedial prefrontal cortex supports affective future simulation by integrating distributed knowledge Roland G. Benoit, Karl K. Szpunar, and Daniel L. Schacter The MuSK activator agrin has a separate role essential for postnatal maintenance of neuromuscular synapses Tohru Tezuka, Akane Inoue, Taisuke Hoshi, Scott D. Weatherbee, Robert W. Burgess, Ryo Ueta, and Yuji Yamanashi Asymmetrical integration of sensory information during mating decisions in grasshoppers Jan Clemens, Stefanie Krämer, and Bernhard Ronacher RHGF-1/PDZ-RhoGEF and retrograde DLK-1 signaling drive neuronal remodeling on microtubule disassembly Chun-Hao Chen, Albert Lee, Chien-Po Liao, Ya-Wen Liu, and Chun-Liang Pan Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited Cibu Thomas, Frank Q. Ye, M. Okan Irfanoglu, Pooja Modi, Kadharbatcha S. Saleem, David A. Leopold, and Carlo Pierpaoli Spatial embedding of structural similarity in the cerebral cortex H. Francis Song, Henry Kennedy, and Xiao-Jing Wang SUMOylation at K340 inhibits tau degradation through deregulating its phosphorylation and ubiquitination Hong-Bin Luo, Yi-Yuan Xia, Xi-Ji Shu, Zan-Chao Liu, Ye Feng, Xing-Hua Liu, Guang Yu, Gang Yin, Yan-Si Xiong, Kuan Zeng, Jun Jiang, Keqiang Ye, Xiao-Chuan Wang, and Jian-Zhi Wang Mosquito odorant receptor for DEET and methyl jasmonate  Pingxi Xu, Young-Moo Choo, Alyssa De La Rosa, and Walter S. Leal Pharmacology Basal and β-adrenergic regulation of the cardiac calcium channel CaV1.2 requires phosphorylation of serine 1700 Ying Fu, Ruth E. Westenbroek, Todd Scheuer, and William A. Catterall Physiology Decreased polycystin 2 expression alters calcium-contraction coupling and changes β-adrenergic signaling pathways Ivana Y. Kuo, Andrea T. Kwaczala, Lily Nguyen, Kerry S. Russell, Stuart G. Campbell, and Barbara E. Ehrlich Population Biology Human population reduction is not a quick fix for environmental problems Corey J. A. Bradshaw and Barry W. Brook Psychological and Cognitive Sciences Overtone-based pitch selection in hermit thrush song: Unexpected convergence with scale construction in human music  Emily L. Doolittle, Bruno Gingras, Dominik M. Endres, and W. Tecumseh Fitch Sustainability Science Recent climate and air pollution impacts on Indian agriculture  Jennifer Burney and V. Ramanathan New pasture plants intensify invasive species risk Don A. Driscoll, Jane A. Catford, Jacob N. Barney, Philip E. Hulme, Inderjit, Tara G. Martin, Aníbal Pauchard, Petr Pyšek, David M. Richardson, Sophie Riley, and Vernon Visser Corrections Correction for Oliver et al., Correlating the motion of electrons and nuclei with two-dimensional electronic–vibrational spectroscopy Correction for Vestergaard et al., Critical roles of isoleucine-364 and adjacent residues in a hydrophobic gate control of phospholipid transport by the mammalian P4-ATPase ATP8A2 Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (...) * 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2014 by the National Academy of Sciences