Fwd: PNAS Section Alert for April 19, 2016

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Proceedings of the National Academy of Sciences Section Alert for April 19, 2016 Agricultural Sciences Gene duplication confers enhanced expression of 27-kDa γ-zein for endosperm modification in quality protein maize  Hongjun Liu, Junpeng Shi, Chuanlong Sun, Hao Gong, Xingming Fan, Fazhan Qiu, Xuehui Huang, Qi Feng, Xixi Zheng, Ningning Yuan, Changsheng Li, Zhiyong Zhang, Yiting Deng, Jiechen Wang, Guangtang Pan, Bin Han, Jinsheng Lai, and Yongrui Wu Genetics Rational elicitation of cold-sensitive phenotypes Chetana Baliga, Sandipan Majhi, Kajari Mondal, Antara Bhattacharjee, K. VijayRaghavan, and Raghavan Varadarajan A tale of two tardigrades Thomas A. Richards and Adam Monier Immunology and Inflammation Biodegradable antigen-associated PLG nanoparticles tolerize Th2-mediated allergic airway inflammation pre- and postsensitization Charles B. Smarr, Woon Teck Yap, Tobias P. Neef, Ryan M. Pearson, Zoe N. Hunter, Igal Ifergan, Daniel R. Getts, Paul J. Bryce, Lonnie D. Shea, and Stephen D. Miller Durable antitumor responses to CD47 blockade require adaptive immune stimulation Jonathan T. Sockolosky, Michael Dougan, Jessica R. Ingram, Chia Chi M. Ho, Monique J. Kauke, Steven C. Almo, Hidde L. Ploegh, and K. Christopher Garcia A distant trophoblast-specific enhancer controls HLA-G expression at the maternal–fetal interface Leonardo M. R. Ferreira, Torsten B. Meissner, Tarjei S. Mikkelsen, William Mallard, Charles W. O'Donnell, Tamara Tilburgs, Hannah A. B. Gomes, Raymond Camahort, Richard I. Sherwood, David K. Gifford, John L. Rinn, Chad A. Cowan, and Jack L. Strominger Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system  Alexis Vandenbon, Viet H. Dinh, Norihisa Mikami, Yohko Kitagawa, Shunsuke Teraguchi, Naganari Ohkura, and Shimon Sakaguchi Dimethyl fumarate treatment induces adaptive and innate immune modulation independent of Nrf2  Ulf Schulze-Topphoff, Michel Varrin-Doyer, Kara Pekarek, Collin M. Spencer, Aparna Shetty, Sharon A. Sagan, Bruce A. C. Cree, Raymond A. Sobel, Brian T. Wipke, Lawrence Steinman, Robert H. Scannevin, and Scott S. Zamvil Applied Biological Sciences Controllability analysis of the directed human protein interaction network identifies disease genes and drug targets Arunachalam Vinayagam, Travis E. Gibson, Ho-Joon Lee, Bahar Yilmazel, Charles Roesel, Yanhui Hu, Young Kwon, Amitabh Sharma, Yang-Yu Liu, Norbert Perrimon, and Albert-László Barabási Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array  Carl W. Fuller, Shiv Kumar, Mintu Porel, Minchen Chien, Arek Bibillo, P. Benjamin Stranges, Michael Dorwart, Chuanjuan Tao, Zengmin Li, Wenjing Guo, Shundi Shi, Daniel Korenblum, Andrew Trans, Anne Aguirre, Edward Liu, Eric T. Harada, James Pollard, Ashwini Bhat, Cynthia Cech, Alexander Yang, Cleoma Arnold, Mirkó Palla, Jennifer Hovis, Roger Chen, Irina Morozova, Sergey Kalachikov, James J. Russo, John J. Kasianowicz, Randy Davis, Stefan Roever, George M. Church, and Jingyue Ju Development of potent small-molecule inhibitors to drug the undruggable steroid receptor coactivator-3 Xianzhou Song, Jianwei Chen, Mingkun Zhao, Chengwei Zhang, Yang Yu, David M. Lonard, Dar-Chone Chow, Timothy Palzkill, Jianming Xu, Bert W. O'Malley, and Jin Wang Mathematics Independence of ℓ and traces on cohomology Martin Olsson Medical Sciences NF-κB–driven suppression of FOXO3a contributes to EGFR mutation-independent gefitinib resistance Ching-Feng Chiu, Yi-Wen Chang, Kuang-Tai Kuo, Yu-Shiuan Shen, Chien-Ying Liu, Yang-Hao Yu, Ching-Chia Cheng, Kang-Yun Lee, Feng-Chi Chen, Min-Kung Hsu, Tsang-Chih Kuo, Jui-Ti Ma, and Jen-Liang Su Comparative systems pharmacology of HIF stabilization in the prevention of retinopathy of prematurity George Hoppe, Suzy Yoon, Banu Gopalan, Alexandria R. Savage, Rebecca Brown, Kelsey Case, Amit Vasanji, E. Ricky Chan, Randi B. Silver, and Jonathan E. Sears Applied Physical Sciences Photonic topological insulator with broken time-reversal symmetry  Cheng He, Xiao-Chen Sun, Xiao-Ping Liu, Ming-Hui Lu, Yulin Chen, Liang Feng, and Yan-Feng Chen Stable aqueous dispersions of optically and electronically active phosphorene Joohoon Kang, Spencer A. Wells, Joshua D. Wood, Jae-Hyeok Lee, Xiaolong Liu, Christopher R. Ryder, Jian Zhu, Jeffrey R. Guest, Chad A. Husko, and Mark C. Hersam Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex Barak Raveh, Jerome M. Karp, Samuel Sparks, Kaushik Dutta, Michael P. Rout, Andrej Sali, and David Cowburn Neuroscience The neural roots of mathematical expertise Daniel Ansari Joint representation of translational and rotational components of optic flow in parietal cortex Adhira Sunkara, Gregory C. DeAngelis, and Dora E. Angelaki Fasting induces a form of autonomic synaptic plasticity that prevents hypoglycemia Manqi Wang, Qian Wang, and Matthew D. Whim Fine processes of Nestin-GFP–positive radial glia-like stem cells in the adult dentate gyrus ensheathe local synapses and vasculature Jonathan Moss, Elias Gebara, Eric A. Bushong, Irene Sánchez-Pascual, Ruadhan O'Laoi, Imane El M'Ghari, Jacqueline Kocher-Braissant, Mark H. Ellisman, and Nicolas Toni Primary motor and sensory cortical areas communicate via spatiotemporally coordinated networks at multiple frequencies Fritzie I. Arce-McShane, Callum F. Ross, Kazutaka Takahashi, Barry J. Sessle, and Nicholas G. Hatsopoulos Phosphorylation of synaptotagmin-1 controls a post-priming step in PKC-dependent presynaptic plasticity Arthur P. H. de Jong, Marieke Meijer, Ingrid Saarloos, Lennart Niels Cornelisse, Ruud F. G. Toonen, Jakob B. Sørensen, and Matthijs Verhage IL-33 ameliorates Alzheimer's disease-like pathology and cognitive decline  Amy K. Y. Fu, Kwok-Wang Hung, Michael Y. F. Yuen, Xiaopu Zhou, Deejay S. Y. Mak, Ivy C. W. Chan, Tom H. Cheung, Baorong Zhang, Wing-Yu Fu, Foo Y. Liew, and Nancy Y. Ip Re-silencing of silent synapses unmasks anti-relapse effects of environmental enrichment Yao-Ying Ma, Xiusong Wang, Yanhua Huang, Helene Marie, Eric J. Nestler, Oliver M. Schlüter, and Yan Dong Gene therapy, CMT1X, and the inherited neuropathies Michael E. Shy Biochemistry Elongation factor 4 remodels the A-site tRNA on the ribosome  Matthieu G. Gagnon, Jinzhong Lin, and Thomas A. Steitz Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ Maria A. Schumacher and Wenjie Zeng Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3 Wenguang G. Liang, Catherine G. Triandafillou, Teng-Yi Huang, Medel Manuel L. Zulueta, Shiladitya Banerjee, Aaron R. Dinner, Shang-Cheng Hung, and Wei-Jen Tang Hysteresis in DNA compaction by Dps is described by an Ising model Natalia N. Vtyurina, David Dulin, Margreet W. Docter, Anne S. Meyer, Nynke H. Dekker, and Elio A. Abbondanzieri Pharmacology Novel cell-free high-throughput screening method for pharmacological tools targeting K+ channels Zhenwei Su, Emily C. Brown, Weiwei Wang, and Roderick MacKinnon Biophysics and Computational Biology Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor  Annika Deckert, Christopher A. Waudby, Tomasz Wlodarski, Anne S. Wentink, Xiaolin Wang, John P. Kirkpatrick, Jack F. S. Paton, Carlo Camilloni, Predrag Kukic, Christopher M. Dobson, Michele Vendruscolo, Lisa D. Cabrita, and John Christodoulou Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex Barak Raveh, Jerome M. Karp, Samuel Sparks, Kaushik Dutta, Michael P. Rout, Andrej Sali, and David Cowburn Energy landscapes of a mechanical prion and their implications for the molecular mechanism of long-term memory Mingchen Chen, Weihua Zheng, and Peter G. Wolynes Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange Wookyung Yu, Michael C. Baxa, Isabelle Gagnon, Karl F. Freed, and Tobin R. Sosnick Cell Biology Clusters of circulating tumor cells traverse capillary-sized vessels  Sam H. Au, Brian D. Storey, John C. Moore, Qin Tang, Yeng-Long Chen, Sarah Javaid, A. Fatih Sarioglu, Ryan Sullivan, Marissa W. Madden, Ryan O'Keefe, Daniel A. Haber, Shyamala Maheswaran, David M. Langenau, Shannon L. Stott, and Mehmet Toner Physiology Sex differences in the circadian regulation of sleep and waking cognition in humans  Nayantara Santhi, Alpar S. Lazar, Patrick J. McCabe, June C. Lo, John A. Groeger, and Derk-Jan Dijk Chemistry Two-dimensional infrared spectroscopy measures the structural dynamics of a self-assembled film only one molecule thick Martin T. Zanni Energy landscapes of a mechanical prion and their implications for the molecular mechanism of long-term memory Mingchen Chen, Weihua Zheng, and Peter G. Wolynes Dynamics of prebiotic RNA reproduction illuminated by chemical game theory Jessica A. M. Yeates, Christian Hilbe, Martin Zwick, Martin A. Nowak, and Niles Lehman The hydrophobic effect, and fluctuations: The long and the short of it Erte Xi and Amish J. Patel Plant Biology Very-long-chain fatty acids restrict regeneration capacity by confining pericycle competence for callus formation in Arabidopsis Baoshuan Shang, Chongyi Xu, Xixi Zhang, Huifen Cao, Wei Xin, and Yuxin Hu Developmental Biology Tissue-specific DNA demethylation is required for proper B-cell differentiation and function Shari Orlanski, Verena Labi, Yitzhak Reizel, Adam Spiro, Michal Lichtenstein, Rena Levin-Klein, Sergei B. Koralov, Yael Skversky, Klaus Rajewsky, Howard Cedar, and Yehudit Bergman Population Biology Fluctuating survival selection explains variation in avian group size Charles R. Brown, Mary Bomberger Brown, Erin A. Roche, Valerie A. O'Brien, and Catherine E. Page National- and state-level impact and cost-effectiveness of nonavalent HPV vaccination in the United States David P. Durham, Martial L. Ndeffo-Mbah, Laura A. Skrip, Forrest K. Jones, Chris T. Bauch, and Alison P. Galvani Earth, Atmospheric, and Planetary Sciences Abrupt monsoon transitions as seen in paleorecords can be explained by moisture-advection feedback Anders Levermann, Vladimir Petoukhov, Jacob Schewe, and Hans Joachim Schellnhuber Reply to Levermann et al.: Linear scaling for monsoons based on well-verified balance between adiabatic cooling and latent heat release William R. Boos and Trude Storelvmo Challenges in constraining anthropogenic aerosol effects on cloud radiative forcing using present-day spatiotemporal variability Steven Ghan, Minghuai Wang, Shipeng Zhang, Sylvaine Ferrachat, Andrew Gettelman, Jan Griesfeller, Zak Kipling, Ulrike Lohmann, Hugh Morrison, David Neubauer, Daniel G. Partridge, Philip Stier, Toshihiko Takemura, Hailong Wang, and Kai Zhang Dinosaurs in decline tens of millions of years before their final extinction Manabu Sakamoto, Michael J. Benton, and Chris Venditti Cu isotopes in marine black shales record the Great Oxidation Event Ernest Chi Fru, Nathalie P. Rodríguez, Camille A. Partin, Stefan V. Lalonde, Per Andersson, Dominik J. Weiss, Abderrazak El Albani, Ilia Rodushkin, and Kurt O. Konhauser Low-latitude arc–continent collision as a driver for global cooling Oliver Jagoutz, Francis A. Macdonald, and Leigh Royden Psychological and Cognitive Sciences Pain in the ACC? Tor D. Wager, Lauren Y. Atlas, Matthew M. Botvinick, Luke J. Chang, Robert C. Coghill, Karen Deborah Davis, Gian Domenico Iannetti, Russell A. Poldrack, Alexander J. Shackman, and Tal Yarkoni Reply to Wager et al.: Pain and the dACC: The importance of hit rate-adjusted effects and posterior probabilities with fair priors Matthew D. Lieberman, Shannon M. Burns, Jared B. Torre, and Naomi I. Eisenberger The neural roots of mathematical expertise Daniel Ansari Models inconsistent with altruism cannot explain the evolution of human cooperation Kristian Ove R. Myrseth and Conny E. Wollbrant Reply to Myrseth and Wollbrant: Our model is consistent with altruism, and helps to explain its evolution Adam Bear and David G. Rand Effects of serotonin 2A/1A receptor stimulation on social exclusion processing Katrin H. Preller, Thomas Pokorny, Andreas Hock, Rainer Kraehenmann, Philipp Stämpfli, Erich Seifritz, Milan Scheidegger, and Franz X. Vollenweider Gelada vocal sequences follow Menzerath's linguistic law Morgan L. Gustison, Stuart Semple, Ramon Ferrer-i-Cancho, and Thore J. Bergman Sex differences in the circadian regulation of sleep and waking cognition in humans  Nayantara Santhi, Alpar S. Lazar, Patrick J. McCabe, June C. Lo, John A. Groeger, and Derk-Jan Dijk Moral status of accidents Rebecca Saxe Ecology Predicting the spread of marine species introduced by global shipping  Hanno Seebens, Nicole Schwartz, Peter J. Schupp, and Bernd Blasius Meta-analysis reveals that hydraulic traits explain cross-species patterns of drought-induced tree mortality across the globe William R. L. Anderegg, Tamir Klein, Megan Bartlett, Lawren Sack, Adam F. A. Pellegrini, Brendan Choat, and Steven Jansen Statistics Boosting association rule mining in large datasets via Gibbs sampling Guoqi Qian, Calyampudi Radhakrishna Rao, Xiaoying Sun, and Yuehua Wu Engineering Biodegradable antigen-associated PLG nanoparticles tolerize Th2-mediated allergic airway inflammation pre- and postsensitization Charles B. Smarr, Woon Teck Yap, Tobias P. Neef, Ryan M. Pearson, Zoe N. Hunter, Igal Ifergan, Daniel R. Getts, Paul J. Bryce, Lonnie D. Shea, and Stephen D. Miller Clusters of circulating tumor cells traverse capillary-sized vessels  Sam H. Au, Brian D. Storey, John C. Moore, Qin Tang, Yeng-Long Chen, Sarah Javaid, A. Fatih Sarioglu, Ryan Sullivan, Marissa W. Madden, Ryan O'Keefe, Daniel A. Haber, Shyamala Maheswaran, David M. Langenau, Shannon L. Stott, and Mehmet Toner Sustainability Science Averting a global fisheries disaster Boris Worm Crafting usable knowledge for sustainable development William C. Clark, Lorrae van Kerkhoff, Louis Lebel, and Gilberto C. Gallopin Environmental Sciences Averting a global fisheries disaster Boris Worm Systems Biology Part mutual information for quantifying direct associations in networks Juan Zhao, Yiwei Zhou, Xiujun Zhang, and Luonan Chen Evolution Models inconsistent with altruism cannot explain the evolution of human cooperation Kristian Ove R. Myrseth and Conny E. Wollbrant Reply to Myrseth and Wollbrant: Our model is consistent with altruism, and helps to explain its evolution Adam Bear and David G. Rand Dinosaurs in decline tens of millions of years before their final extinction Manabu Sakamoto, Michael J. Benton, and Chris Venditti Antibiotic treatment enhances the genome-wide mutation rate of target cells Hongan Long, Samuel F. Miller, Chloe Strauss, Chaoxian Zhao, Lei Cheng, Zhiqiang Ye, Katherine Griffin, Ronald Te, Heewook Lee, Chi-Chun Chen, and Michael Lynch What insects can tell us about the origins of consciousness Andrew B. Barron and Colin Klein Dynamics of prebiotic RNA reproduction illuminated by chemical game theory Jessica A. M. Yeates, Christian Hilbe, Martin Zwick, Martin A. Nowak, and Niles Lehman Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness Yinhua Wang, Carolina Diaz Arenas, Daniel M. Stoebel, Kenneth Flynn, Ethan Knapp, Marcus M. Dillon, Andrea Wünsche, Philip J. Hatcher, Francisco B.-G. Moore, Vaughn S. Cooper, and Tim F. Cooper Taste for poison reevolves in fruit flies Noah K. Whiteman and Andrew D. Gloss Perspectives What insects can tell us about the origins of consciousness Andrew B. Barron and Colin Klein Crafting usable knowledge for sustainable development William C. Clark, Lorrae van Kerkhoff, Louis Lebel, and Gilberto C. Gallopin QnAs QnAs with Jennifer Doudna Prashant Nair In This Issue In This Issue Letters and Replies Pain in the ACC? Tor D. Wager, Lauren Y. Atlas, Matthew M. Botvinick, Luke J. Chang, Robert C. Coghill, Karen Deborah Davis, Gian Domenico Iannetti, Russell A. Poldrack, Alexander J. Shackman, and Tal Yarkoni Reply to Wager et al.: Pain and the dACC: The importance of hit rate-adjusted effects and posterior probabilities with fair priors Matthew D. Lieberman, Shannon M. Burns, Jared B. Torre, and Naomi I. Eisenberger Abrupt monsoon transitions as seen in paleorecords can be explained by moisture-advection feedback Anders Levermann, Vladimir Petoukhov, Jacob Schewe, and Hans Joachim Schellnhuber Reply to Levermann et al.: Linear scaling for monsoons based on well-verified balance between adiabatic cooling and latent heat release William R. Boos and Trude Storelvmo Models inconsistent with altruism cannot explain the evolution of human cooperation Kristian Ove R. Myrseth and Conny E. Wollbrant Reply to Myrseth and Wollbrant: Our model is consistent with altruism, and helps to explain its evolution Adam Bear and David G. Rand Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. * 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2016 by the National Academy of Sciences