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Fwd: PNAS Early Edition for 7 May 2015

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Date: Fri, May 8, 2015 at 7:46 AM
Subject: PNAS Early Edition for 7 May 2015
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences
Letters (Online Only)
Reply to Gerlee and Altrock: Diffusion and population size in game theory models of cancer
Marco Archetti, Daniela A. Ferraro, and Gerhard Christofori
Next-generation sequencing in African Americans with colorectal cancer
Hassan Ashktorab, Sudhir Varma, and Hassan Brim
Reply to Ashktorab et al.: Mutational landscape of colon cancers in African Americans
Kishore Guda, Martina L. Veigl, Vinay Varadan, Arman Nosrati, Lakshmeswari Ravi, James Lutterbaugh, Lydia Beard, James K. V. Willson, W. David Sedwick, Zhenghe John Wang, Neil Molyneaux, Alexander Miron, Mark D. Adams, Robert C. Elston, Sanford D. Markowitz, and Joseph E. Willis
Reinstate regional transport of PM2.5 as a major cause of severe haze in Beijing
Pengfei Li, Renchang Yan, Shaocai Yu, Si Wang, Weiping Liu, and Huiming Bao
Reply to van de Sandt and Rimmelzwaan: Matching epitope display with functional avidity
Derin B. Keskin, Bruce R. Reinhold, Guang Lan Zhang, Alexander R. Ivanov, Barry L. Karger, and Ellis L. Reinherz

Retrospective
John Schellman and the birth of protein folding
Robert L. Baldwin and Peter H. von Hippel

Commentaries
Regulation of oxygen delivery to the body via hypoxic vasodilation
Shathiyah Kulandavelu, Wayne Balkan, and Joshua M. Hare
Snake robot uncovers secrets to sidewinders' maneuverability
Sarah A. Stamper, Shahin Sefati, and Noah J. Cowan
Targeted noninvasive imaging of the innate immune response
Melissa N. McCracken and Caius G. Radu

Symbioses Becoming Permanent: The Origins and Evolutionary Trajectories of Organelles Sackler Colloquium

The Dynamics of Change in Multiethnic Societies Special Feature (free online)

Physical Sciences
Applied Mathematics
Applied Physical Sciences
Capillary muscle
Caroline Cohen, Timothée Mouterde, David Quéré, and Christophe Clanet
Chemistry
Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis
Bradley M. Hover, Nam K. Tonthat, Maria A. Schumacher, and Kenichi Yokoyama
Rational design of self-assembly pathways for complex multicomponent structures
William M. Jacobs, Aleks Reinhardt, and Daan Frenkel
Role of a ribosomal RNA phosphate oxygen during the EF-G–triggered GTP hydrolysis Open Access Article
Miriam Koch, Sara Flür, Christoph Kreutz, Eric Ennifar, Ronald Micura, and Norbert Polacek
Earth, Atmospheric, and Planetary Sciences
Cahokia's emergence and decline coincided with shifts of flood frequency on the Mississippi River
Samuel E. Munoz, Kristine E. Gruley, Ashtin Massie, David A. Fike, Sissel Schroeder, and John W. Williams
Environmental Sciences
Evaluating a groundwater supply contamination incident attributed to Marcellus Shale gas development
Garth T. Llewellyn, Frank Dorman, J. L. Westland, D. Yoxtheimer, Paul Grieve, Todd Sowers, E. Humston-Fulmer, and Susan L. Brantley
Physics
Signature properties of water: Their molecular electronic origins
Vlad P. Sokhan, Andrew P. Jones, Flaviu S. Cipcigan, Jason Crain, and Glenn J. Martyna
Sample and population exponents of generalized Taylor's law Open Access Article
Andrea Giometto, Marco Formentin, Andrea Rinaldo, Joel E. Cohen, and Amos Maritan
Elastocapillary interactions on nematic films
Iris B. Liu, Mohamed A. Gharbi, Victor L. Ngo, Randall D. Kamien, Shu Yang, and Kathleen J. Stebe
Statistics
Ambiguity and nonidentifiability in the statistical analysis of neural codes Open Access Article
Asohan Amarasingham, Stuart Geman, and Matthew T. Harrison

Social Sciences
Anthropology
Cahokia's emergence and decline coincided with shifts of flood frequency on the Mississippi River
Samuel E. Munoz, Kristine E. Gruley, Ashtin Massie, David A. Fike, Sissel Schroeder, and John W. Williams
Psychological and Cognitive Sciences

Biological Sciences
Biochemistry
Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome
Anthony J. O'Donoghue, Giselle M. Knudsen, Chapman Beekman, Jenna A. Perry, Alexander D. Johnson, Joseph L. DeRisi, Charles S. Craik, and Richard J. Bennett
Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness
Larisa Estefanía Cybulski, Joost Ballering, Anastassiia Moussatova, Maria Eugenia Inda, Daniela B. Vazquez, Tsjerk A. Wassenaar, Diego de Mendoza, D. Peter Tieleman, and J. Antoinette Killian
Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis
Bradley M. Hover, Nam K. Tonthat, Maria A. Schumacher, and Kenichi Yokoyama
Role of a ribosomal RNA phosphate oxygen during the EF-G–triggered GTP hydrolysis Open Access Article
Miriam Koch, Sara Flür, Christoph Kreutz, Eric Ennifar, Ronald Micura, and Norbert Polacek
Biophysics and Computational Biology
Organization and dynamics of the nonhomologous end-joining machinery during DNA double-strand break repair
Dylan A. Reid, Sarah Keegan, Alejandra Leo-Macias, Go Watanabe, Natasha T. Strande, Howard H. Chang, Betul Akgol Oksuz, David Fenyo, Michael R. Lieber, Dale A. Ramsden, and Eli Rothenberg
Cytoplasmic dynein regulates its attachment to microtubules via nucleotide state-switched mechanosensing at multiple AAA domains Open Access Article
Matthew P. Nicholas, Florian Berger, Lu Rao, Sibylle Brenner, Carol Cho, and Arne Gennerich
Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site
Mohammad T. Mazhab-Jafari, Christopher B. Marshall, Matthew J. Smith, Geneviève M. C. Gasmi-Seabrook, Peter B. Stathopulos, Fuyuhiko Inagaki, Lewis E. Kay, Benjamin G. Neel, and Mitsuhiko Ikura
Mechanical stimulation induces formin-dependent assembly of a perinuclear actin rim Open Access Article
Xiaowei Shao, Qingsen Li, Alex Mogilner, Alexander D. Bershadsky, and G. V. Shivashankar
Cell Biology
Apolipoprotein CIII links islet insulin resistance to β-cell failure in diabetes
Karin Åvall, Yusuf Ali, Ingo B. Leibiger, Barbara Leibiger, Tilo Moede, Meike Paschen, Andrea Dicker, Elisabetta Daré, Martin Köhler, Erwin Ilegems, Midhat H. Abdulreda, Mark Graham, Rosanne M. Crooke, Vanessa S. Y. Tay, Essam Refai, Stefan K. Nilsson, Stefan Jacob, Lars Selander, Per-Olof Berggren, and Lisa Juntti-Berggren
The membrane remodeling protein Pex11p activates the GTPase Dnm1p during peroxisomal fission Open Access Article
Chris Williams, Lukasz Opalinski, Christiane Landgraf, Joseph Costello, Michael Schrader, Arjen M. Krikken, Kèvin Knoops, Anita M. Kram, Rudolf Volkmer, and Ida J. van der Klei
Bestrophin 1 is indispensable for volume regulation in human retinal pigment epithelium cells Open Access Article
Andrea Milenkovic, Caroline Brandl, Vladimir M. Milenkovic, Thomas Jendryke, Lalida Sirianant, Potchanart Wanitchakool, Stephanie Zimmermann, Charlotte M. Reiff, Franziska Horling, Heinrich Schrewe, Rainer Schreiber, Karl Kunzelmann, Christian H. Wetzel, and Bernhard H. F. Weber
Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation Open Access Article
Liliana Malinovska, Sandra Palm, Kimberley Gibson, Jean-Marc Verbavatz, and Simon Alberti
Developmental Biology
Ecology
Sample and population exponents of generalized Taylor's law Open Access Article
Andrea Giometto, Marco Formentin, Andrea Rinaldo, Joel E. Cohen, and Amos Maritan
Supplementary feeding restructures urban bird communities
Josie A. Galbraith, Jacqueline R. Beggs, Darryl N. Jones, and Margaret C. Stanley
Evolution
Malaria continues to select for sickle cell trait in Central Africa Open Access Article
Eric Elguero, Lucrèce M. Délicat-Loembet, Virginie Rougeron, Céline Arnathau, Benjamin Roche, Pierre Becquart, Jean-Paul Gonzalez, Dieudonné Nkoghe, Lucas Sica, Eric M. Leroy, Patrick Durand, Francisco J. Ayala, Benjamin Ollomo, François Renaud, and Franck Prugnolle
Obstruction of adaptation in diploids by recessive, strongly deleterious alleles
Zoe June Assaf, Dmitri A. Petrov, and Jamie R. Blundell
Limits to adaptation along environmental gradients
Jitka Polechová and Nicholas H. Barton
Extreme selective sweeps independently targeted the X chromosomes of the great apes Open Access Article
Kiwoong Nam, Kasper Munch, Asger Hobolth, Julien Yann Dutheil, Krishna R. Veeramah, August E. Woerner, Michael F. Hammer, Great Ape Genome Diversity Project, Thomas Mailund, and Mikkel Heide Schierup
Genetics
Lack of pairing during meiosis triggers multigenerational transgene silencing in Caenorhabditis elegans
Luciana E. Leopold, Bree N. Heestand, Soobin Seong, Ludmila Shtessel, and Shawn Ahmed
Medical Sciences
CD4 mimetics sensitize HIV-1-infected cells to ADCC
Jonathan Richard, Maxime Veillette, Nathalie Brassard, Shilpa S. Iyer, Michel Roger, Loïc Martin, Marzena Pazgier, Arne Schön, Ernesto Freire, Jean-Pierre Routy, Amos B. Smith III, Jongwoo Park, David M. Jones, Joel R. Courter, Bruno N. Melillo, Daniel E. Kaufmann, Beatrice H. Hahn, Sallie R. Permar, Barton F. Haynes, Navid Madani, Joseph G. Sodroski, and Andrés Finzi
Interleukin-6/interleukin-21 signaling axis is critical in the pathogenesis of pulmonary arterial hypertension Open Access Article
Takahiro Hashimoto-Kataoka, Naoki Hosen, Takashi Sonobe, Yoh Arita, Taku Yasui, Takeshi Masaki, Masato Minami, Tadakatsu Inagaki, Shigeru Miyagawa, Yoshiki Sawa, Masaaki Murakami, Atsushi Kumanogoh, Keiko Yamauchi-Takihara, Meinoshin Okumura, Tadamitsu Kishimoto, Issei Komuro, Mikiyasu Shirai, Yasushi Sakata, and Yoshikazu Nakaoka
Myocardial pressure overload induces systemic inflammation through endothelial cell IL-33
Wei-Yu Chen, Jaewoo Hong, Joseph Gannon, Rahul Kakkar, and Richard T. Lee
Microbiology
The 3D structure of Kaposi sarcoma herpesvirus LANA C-terminal domain bound to DNA
Jan Hellert, Magdalena Weidner-Glunde, Joern Krausze, Heinrich Lünsdorf, Christiane Ritter, Thomas F. Schulz, and Thorsten Lührs
Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes
Anthony R. Flores, Jessica Galloway-Peña, Pranoti Sahasrabhojane, Miguel Saldaña, Hui Yao, Xiaoping Su, Nadim J. Ajami, Michael E. Holder, Joseph F. Petrosino, Erika Thompson, Immaculada Margarit Y Ros, Roberto Rosini, Guido Grandi, Nicola Horstmann, Sarah Teatero, Allison McGeer, Nahuel Fittipaldi, Rino Rappuoli, Carol J. Baker, and Samuel A. Shelburne
Modeling malaria genomics reveals transmission decline and rebound in Senegal Open Access Article
Rachel F. Daniels, Stephen F. Schaffner, Edward A. Wenger, Joshua L. Proctor, Hsiao-Han Chang, Wesley Wong, Nicholas Baro, Daouda Ndiaye, Fatou Ba Fall, Medoune Ndiop, Mady Ba, Danny A. Milner Jr., Terrie E. Taylor, Daniel E. Neafsey, Sarah K. Volkman, Philip A. Eckhoff, Daniel L. Hartl, and Dyann F. Wirth
Metabolic dependencies drive species co-occurrence in diverse microbial communities Open Access Article
Aleksej Zelezniak, Sergej Andrejev, Olga Ponomarova, Daniel R. Mende, Peer Bork, and Kiran Raosaheb Patil
Neuroscience
Neuronal control of locomotor handedness in Drosophila Open Access Article
Sean M. Buchanan, Jamey S. Kain, and Benjamin L. de Bivort
Behavioral idiosyncrasy reveals genetic control of phenotypic variability Open Access Article
Julien F. Ayroles, Sean M. Buchanan, Chelsea O'Leary, Kyobi Skutt-Kakaria, Jennifer K. Grenier, Andrew G. Clark, Daniel L. Hartl, and Benjamin L. de Bivort
Modulation of extrasynaptic NMDA receptors by synaptic and tonic zinc
Charles T. Anderson, Robert J. Radford, Melissa L. Zastrow, Daniel Y. Zhang, Ulf-Peter Apfel, Stephen J. Lippard, and Thanos Tzounopoulos
Activity-dependent, homeostatic regulation of neurotransmitter release from auditory nerve fibers
Tenzin Ngodup, Jack A. Goetz, Brian C. McGuire, Wei Sun, Amanda M. Lauer, and Matthew A. Xu-Friedman
Specialization and integration of functional thalamocortical connectivity in the human infant Open Access Article
Hilary Toulmin, Christian F. Beckmann, Jonathan O'Muircheartaigh, Gareth Ball, Pumza Nongena, Antonios Makropoulos, Ashraf Ederies, Serena J. Counsell, Nigel Kennea, Tomoki Arichi, Nora Tusor, Mary A. Rutherford, Denis Azzopardi, Nuria Gonzalez-Cinca, Joseph V. Hajnal, and A. David Edwards
Bats adjust their mouth gape to zoom their biosonar field of view
Pavel Kounitsky, Jens Rydell, Eran Amichai, Arjan Boonman, Ofri Eitan, Anthony J. Weiss, and Yossi Yovel
The phototransduction machinery in the rod outer segment has a strong efficacy gradient Open Access Article
Monica Mazzolini, Giuseppe Facchetti, Laura Andolfi, Remo Proietti Zaccaria, Salvatore Tuccio, Johannes Treu, Claudio Altafini, Enzo M. Di Fabrizio, Marco Lazzarino, Gert Rapp, and Vincent Torre
Stable long-range interhemispheric coordination is supported by direct anatomical projections
Kelly Shen, Bratislav Mišić, Ben N. Cipollini, Gleb Bezgin, Martin Buschkuehl, R. Matthew Hutchison, Susanne M. Jaeggi, Ethan Kross, Scott J. Peltier, Stefan Everling, John Jonides, Anthony R. McIntosh, and Marc G. Berman
Neuronal thresholds and choice-related activity of otolith afferent fibers during heading perception
Xiong-jie Yu, J. David Dickman, Gregory C. DeAngelis, and Dora E. Angelaki
Ambiguity and nonidentifiability in the statistical analysis of neural codes Open Access Article
Asohan Amarasingham, Stuart Geman, and Matthew T. Harrison
Pharmacology
Platelet Gi protein Gαi2 is an essential mediator of thrombo-inflammatory organ damage in mice
Vasudharani Devanathan, Ina Hagedorn, David Köhler, Katja Pexa, Deya Cherpokova, Peter Kraft, Madhurendra Singh, Peter Rosenberger, Guido Stoll, Lutz Birnbaumer, Roland P. Piekorz, Sandra Beer-Hammer, Bernhard Nieswandt, and Bernd Nürnberg
Physiology
Capillary muscle
Caroline Cohen, Timothée Mouterde, David Quéré, and Christophe Clanet
G-protein βγ subunits are positive regulators of Kv7.4 and native vascular Kv7 channel activity
Jennifer B. Stott, Oleksandr V. Povstyan, Georgina Carr, Vincenzo Barrese, and Iain A. Greenwood
Plant Biology
Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi
Caroline Gutjahr, Ruairidh J. H. Sawers, Guillaume Marti, Liliana Andrés-Hernández, Shu-Yi Yang, Leonardo Casieri, Herbert Angliker, Edward J. Oakeley, Jean-Luc Wolfender, Cei Abreu-Goodger, and Uta Paszkowski
Psychological and Cognitive Sciences
Place recognition and heading retrieval are mediated by dissociable cognitive systems in mice
Joshua B. Julian, Alexander T. Keinath, Isabel A. Muzzio, and Russell A. Epstein
Age-related changes in working memory and the ability to ignore distraction
Fiona McNab, Peter Zeidman, Robb B. Rutledge, Peter Smittenaar, Harriet R. Brown, Rick A. Adams, and Raymond J. Dolan

Corrections

Retraction

Colloquium Paper (free online)
Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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