Fwd: PNAS Early Edition for 23 Jul 2015

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Proceedings of the National Academy of Sciences Early Edition articles for 23 July 2015 Letters (Online Only) Electric vehicle footprint analysis is misleading Assaf P. Oron Reply to Oron: Electric vehicles provide an opportunity to reduce environmental health effects of transportation Christopher W. Tessum, Jason D. Hill, and Julian D. Marshall Retrospective Stanton J. Peale: Deciphering the motions of planets and moons Robin M. Canup Commentaries From intrinsically disordered protein to context-dependent folding: The α-synuclein tetramer is teased out of hiding Thomas C. Pochapsky Mutant vascular actin is a TAAD misbehaving Peter A. Rubenstein and Kuo-kuang Wen Reactive oxygen species signal chloroplasts to extend themselves Maureen R. Hanson Antenna molecule drives solar hydrogen generation Gerald J. Meyer Perspectives Toward a sustainable biomedical research enterprise: Finding consensus and implementing recommendations  Christopher L. Pickett, Benjamin W. Corb, C. Robert Matthews, Wesley I. Sundquist, and Jeremy M. Berg Symbioses Becoming Permanent: The Origins and Evolutionary Trajectories of Organelles Sackler Colloquium Mitochondrial genomes are retained by selective constraints on protein targeting Patrik Björkholm, Ajith Harish, Erik Hagström, Andreas M. Ernst, and Siv G. E. Andersson The Dynamics of Change in Multiethnic Societies Special Feature (free online) Perspectives Multiethnicity, pluralism, and migration in the south central Andes: An alternate path to state expansion Paul S. Goldstein Physical Sciences Applied Mathematics Robust network oscillations during mammalian respiratory rhythm generation driven by synaptic dynamics Claire Guerrier, John A. Hayes, Gilles Fortin, and David Holcman Study of the instability of the Poiseuille flow using a thermodynamic formalism Jianchun Wang, Qianxiao Li, and Weinan E Applied Physical Sciences Enhanced enstrophy generation for turbulent convection in low-Prandtl-number fluids Jörg Schumacher, Paul Götzfried, and Janet D. Scheel Force generation by the growth of amyloid aggregates Therese W. Herling, Gonzalo A. Garcia, Thomas C. T. Michaels, Wolfgang Grentz, James Dean, Ulyana Shimanovich, Hongze Gang, Thomas Müller, Batuhan Kav, Eugene M. Terentjev, Christopher M. Dobson, and Tuomas P. J. Knowles Chemistry Near-infrared fluorescence molecular imaging of amyloid beta species and monitoring therapy in animal models of Alzheimer's disease  Xueli Zhang, Yanli Tian, Can Zhang, Xiaoyu Tian, Alana W. Ross, Robert D. Moir, Hongbin Sun, Rudolph E. Tanzi, Anna Moore, and Chongzhao Ran Insights into G-quadruplex specific recognition by the DEAH-box helicase RHAU: Solution structure of a peptide–quadruplex complex Brahim Heddi, Vee Vee Cheong, Herry Martadinata, and Anh Tuân Phan Hole hopping through tyrosine/tryptophan chains protects proteins from oxidative damage Harry B. Gray and Jay R. Winkler Earth, Atmospheric, and Planetary Sciences Impact of fossil fuel emissions on atmospheric radiocarbon and various applications of radiocarbon over this century  Heather D. Graven Physics Fragile charge order in the nonsuperconducting ground state of the underdoped high-temperature superconductors B. S. Tan, N. Harrison, Z. Zhu, F. Balakirev, B. J. Ramshaw, A. Srivastava, S. A. Sabok, B. Dabrowski, G. G. Lonzarich, and Suchitra E. Sebastian Tissue fusion over nonadhering surfaces Vincent Nier, Maxime Deforet, Guillaume Duclos, Hannah G. Yevick, Olivier Cochet-Escartin, Philippe Marcq, and Pascal Silberzan Binary nanoparticle superlattices of soft-particle systems Alex Travesset Manipulating electronic phase separation in strongly correlated oxides with an ordered array of antidots Kai Zhang, Kai Du, Hao Liu, X.-G. Zhang, Fanli Lan, Hanxuan Lin, Wengang Wei, Yinyan Zhu, Yunfang Kou, Jian Shao, Jiebin Niu, Wenbin Wang, Ruqian Wu, Lifeng Yin, E. W. Plummer, and Jian Shen Quantum dimer model for the pseudogap metal Matthias Punk, Andrea Allais, and Subir Sachdev Complex dynamics of synergistic coinfections on realistically clustered networks  Laurent Hébert-Dufresne and Benjamin M. Althouse Stress controls the mechanics of collagen networks  Albert James Licup, Stefan Münster, Abhinav Sharma, Michael Sheinman, Louise M. Jawerth, Ben Fabry, David A. Weitz, and Fred C. MacKintosh Social Sciences Anthropology The lameness of King Philip II and Royal Tomb I at Vergina, Macedonia  Antonis Bartsiokas, Juan-Luis Arsuaga, Elena Santos, Milagros Algaba, and Asier Gómez-Olivencia Toward a theory of punctuated subsistence change Isaac I. T. Ullah, Ian Kuijt, and Jacob Freeman Psychological and Cognitive Sciences Top-down modulation in the infant brain: Learning-induced expectations rapidly affect the sensory cortex at 6 months  Lauren L. Emberson, John E. Richards, and Richard N. Aslin Sustainability Science Reduced transmission of human schistosomiasis after restoration of a native river prawn that preys on the snail intermediate host Susanne H. Sokolow, Elizabeth Huttinger, Nicolas Jouanard, Michael H. Hsieh, Kevin D. Lafferty, Armand M. Kuris, Gilles Riveau, Simon Senghor, Cheikh Thiam, Alassane N'Diaye, Djibril Sarr Faye, and Giulio A. De Leo Biological Sciences Anthropology Earliest economic exploitation of chicken outside East Asia: Evidence from the Hellenistic Southern Levant Lee Perry-Gal, Adi Erlich, Ayelet Gilboa, and Guy Bar-Oz The lameness of King Philip II and Royal Tomb I at Vergina, Macedonia  Antonis Bartsiokas, Juan-Luis Arsuaga, Elena Santos, Milagros Algaba, and Asier Gómez-Olivencia Applied Biological Sciences Multitarget, quantitative nanoplasmonic electrical field-enhanced resonating device (NE2RD) for diagnostics Fatih Inci, Chiara Filippini, Murat Baday, Mehmet Ozgun Ozen, Semih Calamak, Naside Gozde Durmus, ShuQi Wang, Emily Hanhauser, Kristen S. Hobbs, Franceline Juillard, Ping Ping Kuang, Michael L. Vetter, Margot Carocci, Hidemi S. Yamamoto, Yuko Takagi, Umit Hakan Yildiz, Demir Akin, Duane R. Wesemann, Amit Singhal, Priscilla L. Yang, Max L. Nibert, Raina N. Fichorova, Daryl T.-Y. Lau, Timothy J. Henrich, Kenneth M. Kaye, Steven C. Schachter, Daniel R. Kuritzkes, Lars M. Steinmetz, Sanjiv S. Gambhir, Ronald W. Davis, and Utkan Demirci Quantification and real-time tracking of RNA in live cells using Sticky-flares William E. Briley, Madison H. Bondy, Pratik S. Randeria, Torin J. Dupper, and Chad A. Mirkin Biochemistry Accuracy of initial codon selection by aminoacyl-tRNAs on the mRNA-programmed bacterial ribosome  Jingji Zhang, Ka-Weng Ieong, Magnus Johansson, and Måns Ehrenberg CBR antimicrobials inhibit RNA polymerase via at least two bridge-helix cap-mediated effects on nucleotide addition Brian Bae, Dhananjaya Nayak, Ananya Ray, Arkady Mustaev, Robert Landick, and Seth A. Darst Plasmid replication initiator interactions with origin 13-mers and polymerase subunits contribute to strand-specific replisome assembly  Aleksandra Wawrzycka, Marta Gross, Anna Wasaznik, and Igor Konieczny Biophysics and Computational Biology High-resolution epitope mapping by HX MS reveals the pathogenic mechanism and a possible therapy for autoimmune TTP syndrome Veronica C. Casina, Wenbing Hu, Jian-Hua Mao, Rui-Nan Lu, Hayley A. Hanby, Brandy Pickens, Zhong-Yuan Kan, Woon K. Lim, Leland Mayne, Eric M. Ostertag, Stephen Kacir, Don L. Siegel, S. Walter Englander, and X. Long Zheng Tissue fusion over nonadhering surfaces Vincent Nier, Maxime Deforet, Guillaume Duclos, Hannah G. Yevick, Olivier Cochet-Escartin, Philippe Marcq, and Pascal Silberzan Computational redesign of the lipid-facing surface of the outer membrane protein OmpA James A. Stapleton, Timothy A. Whitehead, and Vikas Nanda Insights into G-quadruplex specific recognition by the DEAH-box helicase RHAU: Solution structure of a peptide–quadruplex complex Brahim Heddi, Vee Vee Cheong, Herry Martadinata, and Anh Tuân Phan Hole hopping through tyrosine/tryptophan chains protects proteins from oxidative damage Harry B. Gray and Jay R. Winkler Simple mechanism whereby the F1-ATPase motor rotates with near-perfect chemomechanical energy conversion Ei-ichiro Saita, Toshiharu Suzuki, Kazuhiko Kinosita Jr., and Masasuke Yoshida Conformational propensities of intrinsically disordered proteins influence the mechanism of binding and folding Munehito Arai, Kenji Sugase, H. Jane Dyson, and Peter E. Wright Force generation by the growth of amyloid aggregates Therese W. Herling, Gonzalo A. Garcia, Thomas C. T. Michaels, Wolfgang Grentz, James Dean, Ulyana Shimanovich, Hongze Gang, Thomas Müller, Batuhan Kav, Eugene M. Terentjev, Christopher M. Dobson, and Tuomas P. J. Knowles How amide hydrogens exchange in native proteins  Filip Persson and Bertil Halle Heterogeneous binding of the SH3 client protein to the DnaK molecular chaperone Jung Ho Lee, Dongyu Zhang, Christopher Hughes, Yusuke Okuno, Ashok Sekhar, and Silvia Cavagnero Cell Biology The Xist RNA-PRC2 complex at 20-nm resolution reveals a low Xist stoichiometry and suggests a hit-and-run mechanism in mouse cells Hongjae Sunwoo, John Y. Wu, and Jeannie T. Lee Ubl4A is required for insulin-induced Akt plasma membrane translocation through promotion of Arp2/3-dependent actin branching Yu Zhao, Yuting Lin, Honghong Zhang, Adriana Mañas, Wenwen Tang, Yuzhu Zhang, Dianqing Wu, Anning Lin, and Jialing Xiang Prospective isolation of human erythroid lineage-committed progenitors  Yasuo Mori, James Y. Chen, John V. Pluvinage, Jun Seita, and Irving L. Weissman Developmental Biology Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis Jinsuk Kang, Matthias Lienhard, William A. Pastor, Ashu Chawla, Mark Novotny, Ageliki Tsagaratou, Roger S. Lasken, Elizabeth C. Thompson, M. Azim Surani, Sergei B. Koralov, Sundeep Kalantry, Lukas Chavez, and Anjana Rao Knockout silkworms reveal a dispensable role for juvenile hormones in holometabolous life cycle Takaaki Daimon, Miwa Uchibori, Hajime Nakao, Hideki Sezutsu, and Tetsuro Shinoda A genetic basis of variation in eccrine sweat gland and hair follicle density Yana G. Kamberov, Elinor K. Karlsson, Gerda L. Kamberova, Daniel E. Lieberman, Pardis C. Sabeti, Bruce A. Morgan, and Clifford J. Tabin Ecology Reduced transmission of human schistosomiasis after restoration of a native river prawn that preys on the snail intermediate host Susanne H. Sokolow, Elizabeth Huttinger, Nicolas Jouanard, Michael H. Hsieh, Kevin D. Lafferty, Armand M. Kuris, Gilles Riveau, Simon Senghor, Cheikh Thiam, Alassane N'Diaye, Djibril Sarr Faye, and Giulio A. De Leo Global trends in infectious diseases at the wildlife–livestock interface Anke K. Wiethoelter, Daniel Beltrán-Alcrudo, Richard Kock, and Siobhan M. Mor Genetics Regulation of ribosomal DNA amplification by the TOR pathway  Carmen V. Jack, Cristina Cruz, Ryan M. Hull, Markus A. Keller, Markus Ralser, and Jonathan Houseley RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans Mihwa Seo, Keunhee Seo, Wooseon Hwang, Hee Jung Koo, Jeong-Hoon Hahm, Jae-Seong Yang, Seong Kyu Han, Daehee Hwang, Sanguk Kim, Sung Key Jang, Yoontae Lee, Hong Gil Nam, and Seung-Jae V. Lee Immunology and Inflammation IL-15 receptor α signaling constrains the development of IL-17–producing γδ T cells Sara L. Colpitts, Lynn Puddington, and Leo Lefrançois Spontaneous retrotransposon insertion into TNF 3′UTR causes heart valve disease and chronic polyarthritis  Derek Lacey, Peter Hickey, Benedicta D. Arhatari, Lorraine A. O'Reilly, Leona Rohrbeck, Helen Kiriazis, Xiao-Jun Du, and Philippe Bouillet Protein tyrosine phosphatase SAP-1 protects against colitis through regulation of CEACAM20 in the intestinal epithelium Yoji Murata, Takenori Kotani, Yana Supriatna, Yasuaki Kitamura, Shinya Imada, Kohichi Kawahara, Miki Nishio, Edwin Widyanto Daniwijaya, Hisanobu Sadakata, Shinya Kusakari, Munemasa Mori, Yoshitake Kanazawa, Yasuyuki Saito, Katsuya Okawa, Mariko Takeda-Morishita, Hideki Okazawa, Hiroshi Ohnishi, Takeshi Azuma, Akira Suzuki, and Takashi Matozaki Keap1 regulates inflammatory signaling in Mycobacterium avium-infected human macrophages  Jane Atesoh Awuh, Markus Haug, Jennifer Mildenberger, Anne Marstad, Chau Phuc Ngoc Do, Claire Louet, Jørgen Stenvik, Magnus Steigedal, Jan Kristian Damås, Øyvind Halaas, and Trude Helen Flo Erlotinib protects against LPS-induced Endotoxicity because TLR4 needs EGFR to signal Sarmishtha De, Hao Zhou, David DeSantis, Colleen M. Croniger, Xiaoxia Li, and George R. Stark Complement membrane attack complexes activate noncanonical NF-κB by forming an Akt+NIK+ signalosome on Rab5+ endosomes Dan Jane-wit, Yulia V. Surovtseva, Lingfeng Qin, Guangxin Li, Rebecca Liu, Pamela Clark, Thomas D. Manes, Chen Wang, Michael Kashgarian, Nancy C. Kirkiles-Smith, George Tellides, and Jordan S. Pober Dengue virus infection elicits highly polarized CX3CR1+ cytotoxic CD4+ T cells associated with protective immunity Daniela Weiskopf, Derek J. Bangs, John Sidney, Ravi V. Kolla, Aruna D. De Silva, Aravinda M. de Silva, Shane Crotty, Bjoern Peters, and Alessandro Sette Small-molecule enhancers of autophagy modulate cellular disease phenotypes suggested by human genetics  Szu-Yu Kuo, Adam B. Castoreno, Leslie N. Aldrich, Kara G. Lassen, Gautam Goel, Vlado Dančík, Petric Kuballa, Isabel Latorre, Kara L. Conway, Sovan Sarkar, Dorothea Maetzel, Rudolf Jaenisch, Paul A. Clemons, Stuart L. Schreiber, Alykhan F. Shamji, and Ramnik J. Xavier Medical Sciences Molecular and preclinical basis to inhibit PGE2 receptors EP2 and EP4 as a novel nonsteroidal therapy for endometriosis Joe A. Arosh, JeHoon Lee, Dakshnapriya Balasubbramanian, Jone A. Stanley, Charles R. Long, Mary W. Meagher, Kevin G. Osteen, Kaylon L. Bruner-Tran, Robert C. Burghardt, Anna Starzinski-Powitz, and Sakhila K. Banu The pH low insertion peptide pHLIP Variant 3 as a novel marker of acidic malignant lesions Thomas T. Tapmeier, Anna Moshnikova, John Beech, Danny Allen, Paul Kinchesh, Sean Smart, Adrian Harris, Alan McIntyre, Donald M. Engelman, Oleg A. Andreev, Yana K. Reshetnyak, and Ruth J. Muschel Detection of tumor-derived DNA in cerebrospinal fluid of patients with primary tumors of the brain and spinal cord Yuxuan Wang, Simeon Springer, Ming Zhang, K. Wyatt McMahon, Isaac Kinde, Lisa Dobbyn, Janine Ptak, Henry Brem, Kaisorn Chaichana, Gary L. Gallia, Ziya L. Gokaslan, Mari L. Groves, George I. Jallo, Michael Lim, Alessandro Olivi, Alfredo Quinones-Hinojosa, Daniele Rigamonti, Greg J. Riggins, Daniel M. Sciubba, Jon D. Weingart, Jean-Paul Wolinsky, Xiaobu Ye, Sueli Mieko Oba-Shinjo, Suely K. N. Marie, Matthias Holdhoff, Nishant Agrawal, Luis A. Diaz Jr., Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, and Chetan Bettegowda MicroRNA-224 promotes tumor progression in nonsmall cell lung cancer Ri Cui, Wei Meng, Hui-Lung Sun, Taewan Kim, Zhenqing Ye, Matteo Fassan, Young-Jun Jeon, Bin Li, Caterina Vicentini, Yong Peng, Tae Jin Lee, Zhenghua Luo, Lan Liu, Dongyuan Xu, Esmerina Tili, Victor Jin, Justin Middleton, Arnab Chakravarti, Tim Lautenschlaeger, and Carlo M. Croce Microbiology Modulation of the cGAS-STING DNA sensing pathway by gammaherpesviruses Zhe Ma, Sarah R. Jacobs, John A. West, Charles Stopford, Zhigang Zhang, Zoe Davis, Glen N. Barber, Britt A. Glaunsinger, Dirk P. Dittmer, and Blossom Damania Entner–Doudoroff pathway for sulfoquinovose degradation in Pseudomonas putida SQ1 Ann-Katrin Felux, Dieter Spiteller, Janosch Klebensberger, and David Schleheck Neuroscience Near-infrared fluorescence molecular imaging of amyloid beta species and monitoring therapy in animal models of Alzheimer's disease  Xueli Zhang, Yanli Tian, Can Zhang, Xiaoyu Tian, Alana W. Ross, Robert D. Moir, Hongbin Sun, Rudolph E. Tanzi, Anna Moore, and Chongzhao Ran Memory formation and retrieval of neuronal silencing in the auditory cortex Hiroshi Nomura, Kojiro Hara, Reimi Abe, Natsuko Hitora-Imamura, Ryota Nakayama, Takuya Sasaki, Norio Matsuki, and Yuji Ikegaya Structural elements that underlie Doc2β function during asynchronous synaptic transmission Renhao Xue, Jon D. Gaffaney, and Edwin R. Chapman Activity-dependent mismatch between axo-axonic synapses and the axon initial segment controls neuronal output  Winnie Wefelmeyer, Daniel Cattaert, and Juan Burrone Huntington's disease: Neural dysfunction linked to inositol polyphosphate multikinase Ishrat Ahmed, Juan I. Sbodio, Maged M. Harraz, Richa Tyagi, Jonathan C. Grima, Lauren K. Albacarys, Maimon E. Hubbi, Risheng Xu, Seyun Kim, Bindu D. Paul, and Solomon H. Snyder Robust network oscillations during mammalian respiratory rhythm generation driven by synaptic dynamics Claire Guerrier, John A. Hayes, Gilles Fortin, and David Holcman Top-down modulation in the infant brain: Learning-induced expectations rapidly affect the sensory cortex at 6 months  Lauren L. Emberson, John E. Richards, and Richard N. Aslin Norbin ablation results in defective adult hippocampal neurogenesis and depressive-like behavior in mice Hong Wang, Jennifer Warner-Schmidt, Santiago Varela, Grigori Enikolopov, Paul Greengard, and Marc Flajolet Physiology Optogenetic determination of the myocardial requirements for extrasystoles by cell type-specific targeting of ChannelRhodopsin-2 Tania Zaglia, Nicola Pianca, Giulia Borile, Francesca Da Broi, Claudia Richter, Marina Campione, Stephan E. Lehnart, Stefan Luther, Domenico Corrado, Lucile Miquerol, and Marco Mongillo Burst pacemaker activity of the sinoatrial node in sodium–calcium exchanger knockout mice Angelo G. Torrente, Rui Zhang, Audrey Zaini, Jorge F. Giani, Jeanney Kang, Scott T. Lamp, Kenneth D. Philipson, and Joshua I. Goldhaber Replacing SNAP-25b with SNAP-25a expression results in metabolic disease Ismael Valladolid-Acebes, Teresa Daraio, Kerstin Brismar, Tibor Harkany, Sven Ove Ögren, Tomas G. M. Hökfelt, and Christina Bark Hypoxia-induced force increase (HIFI) is a novel mechanism underlying the strengthening of labor contractions, produced by hypoxic stresses Mohammed Alotaibi, Sarah Arrowsmith, and Susan Wray Plant Biology A role for the mevalonate pathway in early plant symbiotic signaling Muthusubramanian Venkateshwaran, Dhileepkumar Jayaraman, Mireille Chabaud, Andrea Genre, Allison J. Balloon, Junko Maeda, Kari Forshey, Désirée den Os, Nicholas W. Kwiecien, Joshua J. Coon, David G. Barker, and Jean-Michel Ané Population Biology Complex dynamics of synergistic coinfections on realistically clustered networks  Laurent Hébert-Dufresne and Benjamin M. Althouse Psychological and Cognitive Sciences Music training alters the course of adolescent auditory development Adam T. Tierney, Jennifer Krizman, and Nina Kraus Correction Correction for Woolgar et al., Fluid intelligence loss linked to restricted regions of damage within frontal and parietal cortex Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com.  Customer Service * 425 Broadway St * Redwood City, CA 94063 * U.S.A. (....) Copyright © 2015 by the National Academy of Sciences