Cień dnia (1): Fwd: PNAS Early Edition for 28 May 2013

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Date: Wed, May 29, 2013 at 7:33 AM
Subject: PNAS Early Edition for 28 May 2013
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Proceedings of the National Academy of Sciences

Early Edition articles for 28 May 2013

Letters (Online Only)

Electronic states of the O₂-tolerant [NiFe] hydrogenase proximal cluster: Jean-Marie Mouesca, Patricia Amara, and Juan C. Fontecilla-Camps

Reply to Mouesca et al.: Electronic structure of the proximal [4Fe-3S] cluster of O₂-tolerant [NiFe] hydrogenases: Maria-Eirini Pandelia, Dmytro Bykov, Robert Izsak, Pascale Infossi, Marie-Thérèse Giudici-Orticoni, Eckhard Bill, Frank Neese, and Wolfgang Lubitz

The surge standard for "events of Katrina magnitude": Andrew Brian Kennedy, Joel Casey Dietrich, and Joannes J. Westerink

Reply to Kennedy et al.: Katrina storm records in tide gauges: Aslak Grinsted, John C. Moore, and Svetlana Jevrejeva

QnAs

QnAs with Roger D. Cone: Ann Griswold

Retrospectives

Francis H. Ruddle (1929–2013): A Pioneer in Human Gene Mapping: Raju Kucherlapati

Robin Main Hochstrasser (1931–2013), giant of physical chemistry: William A. Eaton and H. Peter Trommsdorff

Commentaries

12-oxo-phytodienoic acid interaction with cyclophilin CYP20-3 is a benchmark for understanding retrograde signaling in plants: Stanislav Kopriva

Politics shapes individual choices about energy efficiency: Thomas Dietz, Christina Leshko, and Aaron M. McCright

Ribosomal ambiguity made less ambiguous: Peter B. Moore

Murine leukemia virus p12 functions include hitchhiking into the nucleus: Alan Rein

Physical Sciences

Applied Mathematics

Perceptual basis of evolving Western musical styles OPEN ACCESS ARTICLE: Pablo H. Rodriguez Zivic, Favio Shifres, and Guillermo A. Cecchi

Applied Physical Sciences

Gate-tunable polarized phase of two-dimensional electrons at the LaAlO₃/SrTiO₃ interface: Arjun Joshua, Jonathan Ruhman, Sharon Pecker, Ehud Altman, and Shahal Ilani

Chemistry

Giant surfactants provide a versatile platform for sub-10-nm nanostructure engineering: Xinfei Yu, Kan Yue, I-Fan Hsieh, Yiwen Li, Xue-Hui Dong, Chang Liu, Yu Xin, Hsiao-Fang Wang, An-Chang Shi, George R. Newkome, Rong-Ming Ho, Er-Qiang Chen, Wen-Bin Zhang, and Stephen Z. D. Cheng

Earth, Atmospheric, and Planetary Sciences

Mantle wedge infiltrated with saline fluids from dehydration and decarbonation of subducting slab OPEN ACCESS ARTICLE: Tatsuhiko Kawamoto, Masako Yoshikawa, Yoshitaka Kumagai, Ma. Hannah T. Mirabueno, Mitsuru Okuno, and Tetsuo Kobayashi

Multidecadal to multicentury scale collapses of Northern Hemisphere monsoons over the past millennium: Yemane Asmerom, Victor J. Polyak, Jessica B. T. Rasmussen, Stephen J. Burns, and Matthew Lachniet

Engineering

A Raman-based endoscopic strategy for multiplexed molecular imaging OPEN ACCESS ARTICLE: Cristina L. Zavaleta, Ellis Garai, Jonathan T. C. Liu, Steven Sensarn, Michael J. Mandella, Dominique Van de Sompel, Shai Friedland, Jacques Van Dam, Christopher H. Contag, and Sanjiv S. Gambhir

Mathematics

Curves, dynamical systems, and weighted point counting: Gunther Cornelissen

Physics

Ionic liquids behave as dilute electrolyte solutions: Matthew A. Gebbie, Markus Valtiner, Xavier Banquy, Eric T. Fox, Wesley A. Henderson, and Jacob N. Israelachvili

Sustainability Science

Expert assessments of the cost of light water small modular reactors: Ahmed Abdulla, Inês Lima Azevedo, and M. Granger Morgan

Social Sciences

Psychological and Cognitive Sciences

Heightened emotional contagion in mild cognitive impairment and Alzheimer's disease is associated with temporal lobe degeneration: Virginia E. Sturm, Jennifer S. Yokoyama, William W. Seeley, Joel H. Kramer, Bruce L. Miller, and Katherine P. Rankin

Molecular genetics and subjective well-being OPEN ACCESS ARTICLE: Cornelius A. Rietveld, David Cesarini, Daniel J. Benjamin, Philipp D. Koellinger, Jan-Emmanuel De Neve, Henning Tiemeier, Magnus Johannesson, Patrik K. E. Magnusson, Nancy L. Pedersen, Robert F. Krueger, and Meike Bartels

Social Sciences

Principles of parametric estimation in modeling language competition: Menghan Zhang and Tao Gong

Biological Sciences

Applied Biological Sciences

Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets OPEN ACCESS ARTICLE: Daniel Arango, Kengo Morohashi, Alper Yilmaz, Kouji Kuramochi, Arti Parihar, Bledi Brahimaj, Erich Grotewold, and Andrea I. Doseff

Biochemistry

Structure-based design and mechanisms of allosteric inhibitors for mitochondrial branched-chain α-ketoacid dehydrogenase kinase: Shih-Chia Tso, Xiangbing Qi, Wen-Jun Gui, Jacinta L. Chuang, Lorraine K. Morlock, Amy L. Wallace, Kamran Ahmed, Sunil Laxman, Philippe M. Campeau, Brendan H. Lee, Susan M. Hutson, Benjamin P. Tu, Noelle S. Williams, Uttam K. Tambar, R. Max Wynn, and David T. Chuang

Glycolipozyme MPIase is essential for topology inversion of SecG during preprotein translocation OPEN ACCESS ARTICLE: Michael Moser, Shushi Nagamori, Maria Huber, Hajime Tokuda, and Ken-ichi Nishiyama

Structures of ABCB10, a human ATP-binding cassette transporter in apo- and nucleotide-bound states OPEN ACCESS ARTICLE: Chitra A. Shintre, Ashley C. W. Pike, Qiuhong Li, Jung-In Kim, Alastair J. Barr, Solenne Goubin, Leela Shrestha, Jing Yang, Georgina Berridge, Jonathan Ross, Phillip J. Stansfeld, Mark S. P. Sansom, Aled M. Edwards, Chas Bountra, Brian D. Marsden, Frank von Delft, Alex N. Bullock, Opher Gileadi, Nicola A. Burgess-Brown, and Elisabeth P. Carpenter

Pirin is an iron-dependent redox regulator of NF-κB: Fange Liu, Imran Rehmani, Shingo Esaki, Rong Fu, Lirong Chen, Vesna de Serrano, and Aimin Liu

Biophysics and Computational Biology

Polaro–cryptic mirror of the lookdown as a biological model for open ocean camouflage: Parrish C. Brady, Kort A. Travis, Tara Maginnis, and Molly E. Cummings

Recapitulating maladaptive, multiscale remodeling of failing myocardium on a chip: Megan L. McCain, Sean P. Sheehy, Anna Grosberg, Josue A. Goss, and Kevin Kit Parker

Tension modulates actin filament polymerization mediated by formin and profilin: Naomi Courtemanche, Ja Yil Lee, Thomas D. Pollard, and Eric C. Greene

Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism: Samuel I. A. Cohen, Sara Linse, Leila M. Luheshi, Erik Hellstrand, Duncan A. White, Luke Rajah, Daniel E. Otzen, Michele Vendruscolo, Christopher M. Dobson, and Tuomas P. J. Knowles

Cell Biology

Ypt1 recruits the Atg1 kinase to the preautophagosomal structure: Juan Wang, Shekar Menon, Akinori Yamasaki, Hui-Ting Chou, Thomas Walz, Yu Jiang, and Susan Ferro-Novick

Molecular mechanism and functional role of brefeldin A-mediated ADP-ribosylation of CtBP1/BARS: Antonino Colanzi, Giovanna Grimaldi, Giuliana Catara, Carmen Valente, Claudia Cericola, Prisca Liberali, Maurizio Ronci, Vasiliki S. Lalioti, Agostino Bruno, Andrea R. Beccari, Andrea Urbani, Antonio De Flora, Marco Nardini, Martino Bolognesi, Alberto Luini, and Daniela Corda

Toll-like receptor 3 (TLR3) activation induces microRNA-dependent reexpression of functional RARβ and tumor regression OPEN ACCESS ARTICLE: Roberta Galli, Alessio Paone, Muller Fabbri, Nicola Zanesi, Federica Calore, Luciano Cascione, Mario Acunzo, Antonella Stoppacciaro, Andrea Tubaro, Francesca Lovat, Pierluigi Gasparini, Paolo Fadda, Hansjuerg Alder, Stefano Volinia, Antonio Filippini, Elio Ziparo, Anna Riccioli, and Carlo M. Croce

Citron kinase controls a molecular network required for midbody formation in cytokinesis: Zuni I. Bassi, Morgane Audusseau, Maria Giovanna Riparbelli, Giuliano Callaini, and Pier Paolo D'Avino

How vinculin regulates force transmission: David W. Dumbauld, Ted T. Lee, Ankur Singh, Jan Scrimgeour, Charles A. Gersbach, Evan A. Zamir, Jianping Fu, Christopher S. Chen, Jennifer E. Curtis, Susan W. Craig, and Andrés J. García

Developmental Biology

Differential methylation in glucoregulatory genes of offspring born before vs. after maternal gastrointestinal bypass surgery: Frédéric Guénard, Yves Deshaies, Katherine Cianflone, John G. Kral, Picard Marceau, and Marie-Claude Vohl

Translation initiation factor eIF3h targets specific transcripts to polysomes during embryogenesis OPEN ACCESS ARTICLE: Avik Choudhuri, Umadas Maitra, and Todd Evans

Epithelial neoplasia in Drosophila entails switch to primitive cell states OPEN ACCESS ARTICLE: Sumbul J. Khan, Anjali Bajpai, Mohammad Atif Alam, Ram P. Gupta, Sneh Harsh, Ravi K. Pandey, Surbhi Goel-Bhattacharya, Aditi Nigam, Arati Mishra, and Pradip Sinha

Ecology

Soil biotic legacy effects of extreme weather events influence plant invasiveness OPEN ACCESS ARTICLE: Annelein Meisner, Gerlinde B. De Deyn, Wietse de Boer, and Wim H. van der Putten

Insights into foraminiferal influences on microfabrics of microbialites at Highborne Cay, Bahamas: Joan M. Bernhard, Virginia P. Edgcomb, Pieter T. Visscher, Anna McIntyre-Wressnig, Roger E. Summons, Mary L. Bouxsein, Leeann Louis, and Marleen Jeglinski

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus OPEN ACCESS ARTICLE: Pedro Flombaum, José L. Gallegos, Rodolfo A. Gordillo, José Rincón, Lina L. Zabala, Nianzhi Jiao, David M. Karl, William K. W. Li, Michael W. Lomas, Daniele Veneziano, Carolina S. Vera, Jasper A. Vrugt, and Adam C. Martiny

Environmental Sciences

Regeneration of Little Ice Age bryophytes emerging from a polar glacier with implications of totipotency in extreme environments: Catherine La Farge, Krista H. Williams, and John H. England

Evolution

Principles of parametric estimation in modeling language competition: Menghan Zhang and Tao Gong

Genetics

ZNF408 is mutated in familial exudative vitreoretinopathy and is crucial for the development of zebrafish retinal vasculature OPEN ACCESS ARTICLE: Rob W. J. Collin, Konstantinos Nikopoulos, Margo Dona, Christian Gilissen, Alexander Hoischen, F. Nienke Boonstra, James A. Poulter, Hiroyuki Kondo, Wolfgang Berger, Carmel Toomes, Tomoko Tahira, Lucas R. Mohn, Ellen A. Blokland, Lisette Hetterschijt, Manir Ali, Johanne M. Groothuismink, Lonneke Duijkers, Chris F. Inglehearn, Lea Sollfrank, Tim M. Strom, Eiichi Uchio, C. Erik van Nouhuys, Hannie Kremer, Joris A. Veltman, Erwin van Wijk, and Frans P. M. Cremers

Molecular genetics and subjective well-being OPEN ACCESS ARTICLE: Cornelius A. Rietveld, David Cesarini, Daniel J. Benjamin, Philipp D. Koellinger, Jan-Emmanuel De Neve, Henning Tiemeier, Magnus Johannesson, Patrik K. E. Magnusson, Nancy L. Pedersen, Robert F. Krueger, and Meike Bartels

A microRNA signature defines chemoresistance in ovarian cancer through modulation of angiogenesis OPEN ACCESS ARTICLE: Andrea Vecchione, Barbara Belletti, Francesca Lovat, Stefano Volinia, Gennaro Chiappetta, Simona Giglio, Maura Sonego, Roberto Cirombella, Elisa Concetta Onesti, Patrizia Pellegrini, Daniela Califano, Sandro Pignata, Simona Losito, Vincenzo Canzonieri, Roberto Sorio, Hansjuerg Alder, Dorothee Wernicke, Antonella Stoppacciaro, Gustavo Baldassarre, and Carlo M. Croce

Immunology

Metabolic sensor AMPK directly phosphorylates RAG1 protein and regulates V(D)J recombination: Jee-Hyun Um, Alexandra L. Brown, Samarendra K. Singh, Yong Chen, Marjan Gucek, Baeck-Seung Lee, Megan A. Luckey, Myung K. Kim, Jung-Hyun Park, Barry P. Sleckman, Martin Gellert, and Jay H. Chung

HHLA2 is a member of the B7 family and inhibits human CD4 and CD8 T-cell function: Ruihua Zhao, Jordan M. Chinai, Susan Buhl, Lisa Scandiuzzi, Anjana Ray, Hyungjun Jeon, Kim C. Ohaegbulam, Kaya Ghosh, Aimin Zhao, Matthew D. Scharff, and Xingxing Zang

Innate pro–B-cell progenitors protect against type 1 diabetes by regulating autoimmune effector T cells: Ruddy Montandon, Sarantis Korniotis, Esther Layseca-Espinosa, Christophe Gras, Jérôme Mégret, Sophie Ezine, Michel Dy, and Flora Zavala

Nontransformed, GM-CSF–dependent macrophage lines are a unique model to study tissue macrophage functions: György Fejer, Mareike Dorothee Wegner, Ildiko Györy, Idan Cohen, Peggy Engelhard, Elena Voronov, Thomas Manke, Zsolt Ruzsics, Lars Dölken, Olivia Prazeres da Costa, Nora Branzk, Michael Huber, Antje Prasse, Robert Schneider, Ron N. Apte, Chris Galanos, and Marina A. Freudenberg

General mechanism for modulating immunoglobulin effector function: Peter Sondermann, Andrew Pincetic, Jad Maamary, Katja Lammens, and Jeffrey V. Ravetch

Medical Sciences

Eosinophils secrete IL-4 to facilitate liver regeneration: Y. P. Sharon Goh, Neil C. Henderson, Jose E. Heredia, Alex Red Eagle, Justin I. Odegaard, Nadja Lehwald, Khoa D. Nguyen, Dean Sheppard, Lata Mukundan, Richard M. Locksley, and Ajay Chawla

Circadian clock regulates the host response to Salmonella: Marina M. Bellet, Elisa Deriu, Janet Z. Liu, Benedetto Grimaldi, Christoph Blaschitz, Michael Zeller, Robert A. Edwards, Saurabh Sahar, Satya Dandekar, Pierre Baldi, Michael D. George, Manuela Raffatellu, and Paolo Sassone-Corsi

Neurulation and neurite extension require the zinc transporter ZIP12 (slc39a12): Winyoo Chowanadisai, David M. Graham, Carl L. Keen, Robert B. Rucker, and Mark A. Messerli

HMGA2/TET1/HOXA9 signaling pathway regulates breast cancer growth and metastasis: Miao Sun, Chun-Xiao Song, Hao Huang, Casey A. Frankenberger, Devipriya Sankarasharma, Suzana Gomes, Ping Chen, Jianjun Chen, Kiran K. Chada, Chuan He, and Marsha R. Rosner

Genetic confirmation for a central role for TNFα in the direct action of thyroid stimulating hormone on the skeleton: Li Sun, Ling-Ling Zhu, Ping Lu, Tony Yuen, Jianhua Li, Risheng Ma, Ramkumari Baliram, Surinder S. Moonga, Peng Liu, Alberta Zallone, Maria I. New, Terry F. Davies, and Mone Zaidi

Protein kinase G oxidation is a major cause of injury during sepsis: Olena Rudyk, Alkystis Phinikaridou, Oleksandra Prysyazhna, Joseph R. Burgoyne, René M. Botnar, and Philip Eaton

A Raman-based endoscopic strategy for multiplexed molecular imaging OPEN ACCESS ARTICLE: Cristina L. Zavaleta, Ellis Garai, Jonathan T. C. Liu, Steven Sensarn, Michael J. Mandella, Dominique Van de Sompel, Shai Friedland, Jacques Van Dam, Christopher H. Contag, and Sanjiv S. Gambhir

Microbiology

CCT chaperonin complex is required for efficient delivery of anthrax toxin into the cytosol of host cells: Louise H. Slater, Erik C. Hett, Anne E. Clatworthy, Kevin G. Mark, and Deborah T. Hung

Hybrid DNA virus in Chinese patients with seronegative hepatitis discovered by deep sequencing OPEN ACCESS ARTICLE: Baoyan Xu, Ning Zhi, Gangqing Hu, Zhihong Wan, Xiaobin Zheng, Xiaohong Liu, Susan Wong, Sachiko Kajigaya, Keji Zhao, Qing Mao, and Neal S. Young

Quorum-sensing autoinducers resuscitate dormant Vibrio cholerae in environmental water samples: S. M. Nayeemul Bari, M. Kamruzzaman Roky, M. Mohiuddin, M. Kamruzzaman, John J. Mekalanos, and Shah M. Faruque

Antibody to a conserved antigenic target is protective against diverse prokaryotic and eukaryotic pathogens: Colette Cywes-Bentley, David Skurnik, Tanweer Zaidi, Damien Roux, Rosane B. DeOliveira, Wendy S. Garrett, Xi Lu, Jennifer O'Malley, Kathryn Kinzel, Tauqeer Zaidi, Astrid Rey, Christophe Perrin, Raina N. Fichorova, Alexander K. K. Kayatani, Tomas Maira-Litràn, Marina L. Gening, Yury E. Tsvetkov, Nikolay E. Nifantiev, Lauren O. Bakaletz, Stephen I. Pelton, Douglas T. Golenbock, and Gerald B. Pier

Neuroscience

Sex-specific epigenetic disruption and behavioral changes following low-dose in utero bisphenol A exposure OPEN ACCESS ARTICLE: Marija Kundakovic, Kathryn Gudsnuk, Becca Franks, Jesus Madrid, Rachel L. Miller, Frederica P. Perera, and Frances A. Champagne

Serotonin signaling in the brain of adult female mice is required for sexual preference: Shasha Zhang, Yan Liu, and Yi Rao

Neuroligin-1 links neuronal activity to sleep-wake regulation: Janine El Helou, Erika Bélanger-Nelson, Marlène Freyburger, Stéphane Dorsaz, Thomas Curie, Francesco La Spada, Pierre-Olivier Gaudreault, Éric Beaumont, Philippe Pouliot, Frédéric Lesage, Marcos G. Frank, Paul Franken, and Valérie Mongrain

Pathogenic plasticity of Kv7.2/3 channel activity is essential for the induction of tinnitus: Shuang Li, Veronica Choi, and Thanos Tzounopoulos

Deficits in human trisomy 21 iPSCs and neurons OPEN ACCESS ARTICLE: Jason P. Weick, Dustie L. Held, George F. Bonadurer III, Matthew E. Doers, Yan Liu, Chelsie Maguire, Aaron Clark, Joshua A. Knackert, Katharine Molinarolo, Michael Musser, Lin Yao, Yingnan Yin, Jianfeng Lu, Xiaoqing Zhang, Su-Chun Zhang, and Anita Bhattacharyya

Proteasome overload is a common stress factor in multiple forms of inherited retinal degeneration: Ekaterina S. Lobanova, Stella Finkelstein, Nikolai P. Skiba, and Vadim Y. Arshavsky

Behavioral and biochemical dissociation of arousal and homeostatic sleep need influenced by prior wakeful experience in mice: Ayako Suzuki, Christopher M. Sinton, Robert W. Greene, and Masashi Yanagisawa

Heightened emotional contagion in mild cognitive impairment and Alzheimer's disease is associated with temporal lobe degeneration: Virginia E. Sturm, Jennifer S. Yokoyama, William W. Seeley, Joel H. Kramer, Bruce L. Miller, and Katherine P. Rankin

Pharmacology

AG10 inhibits amyloidogenesis and cellular toxicity of the familial amyloid cardiomyopathy-associated V122I transthyretin OPEN ACCESS ARTICLE: Sravan C. Penchala, Stephen Connelly, Yu Wang, Miki S. Park, Lei Zhao, Aleksandra Baranczak, Irit Rappley, Hannes Vogel, Michaela Liedtke, Ronald M. Witteles, Evan T. Powers, Natàlia Reixach, William K. Chan, Ian A. Wilson, Jeffery W. Kelly, Isabella A. Graef, and Mamoun M. Alhamadsheh

Physiology

Sulfatides are required for renal adaptation to chronic metabolic acidosis: Paula Stettner, Soline Bourgeois, Christian Marsching, Milena Traykova-Brauch, Stefan Porubsky, Viola Nordström, Carsten Hopf, Robert Kösters, Roger Sandhoff, Herbert Wiegandt, Carsten A. Wagner, Hermann-Josef Gröne, and Richard Jennemann

Letm1, the mitochondrial Ca²⁺/H⁺ antiporter, is essential for normal glucose metabolism and alters brain function in Wolf–Hirschhorn syndrome: Dawei Jiang, Linlin Zhao, Clary B. Clish, and David E. Clapham

Plant Biology

Energy-dissipative supercomplex of photosystem II associated with LHCSR3 in Chlamydomonas reinhardtii OPEN ACCESS ARTICLE: Ryutaro Tokutsu and Jun Minagawa

Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria: Markus Sutter, Adjélé Wilson, Ryan L. Leverenz, Rocio Lopez-Igual, Adrien Thurotte, Annette E. Salmeen, Diana Kirilovsky, and Cheryl A. Kerfeld

Receptor-like kinase SOBIR1/EVR interacts with receptor-like proteins in plant immunity against fungal infection: Thomas W. H. Liebrand, Grardy C. M. van den Berg, Zhao Zhang, Patrick Smit, Jan H. G. Cordewener, Antione H. P. America, Jan Sklenar, Alexandra M. E. Jones, Wladimir I. L. Tameling, Silke Robatzek, Bart P. H. J. Thomma, and Matthieu H. A. J. Joosten

Psychological and Cognitive Sciences