Fwd: PNAS Early Edition for 11 Feb 2015

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Proceedings of the National Academy of Sciences Early Edition articles for 11 February 2015 Letters (Online Only) Mandibular evidence supports Homo floresiensis as a distinct species Michael Carrington Westaway, Arthur C. Durband, Colin P. Groves, and Mark Collard Reply to Westaway et al.: Mandibular misrepresentations fail to support the invalid species Homo floresiensis Robert B. Eckhardt, Maciej Henneberg, Sakdapong Chavanaves, Alexander S. Weller, and Kenneth J. Hsü Traces of ATCV-1 associated with laboratory component contamination Kristín Rós Kjartansdóttir, Jens Friis-Nielsen, Maria Asplund, Sarah Mollerup, Tobias Mourier, Randi Holm Jensen, Thomas Arn Hansen, Alba Rey-Iglesia, Stine Raith Richter, David E. Alquezar-Planas, Pernille V. S. Olsen, Lasse Vinner, Helena Fridholm, Thomas Sicheritz-Pontén, Lars Peter Nielsen, Søren Brunak, Eske Willerslev, Jose M. G. Izarzugaza, and Anders Johannes Hansen Reply to Kjartansdóttir et al.: Chlorovirus ATCV-1 findings not explained by contamination Robert H. Yolken, Lorraine Jones-Brando, David D. Dunigan, Geetha Kannan, Faith Dickerson, Emily Severance, Sarven Sabunciyan, C. Conover Talbot Jr., Emese Prandovszky, James R. Gurnon, Irina V. Agarkova, Flora Leister, Kristin L. Gressitt, Ou Chen, Bryan Deuber, Fangrui Ma, Mikhail V. Pletnikov, and James L. Van Etten Retrospective Melford E. Spiro, 1920–2014 Roy G. D'Andrade Profile Profile of Sabeeha Merchant Tinsley H. Davis Commentaries Beliefs modulate the effects of drugs on the human brain Nora D. Volkow and Ruben Baler Reassessment of global gene–language coevolution Keith Hunley Interchangeable allies: Exploiting development and selection to swap symbionts Nicole M. Gerardo Feature Article Ongoing unraveling of a continental fauna: Decline and extinction of Australian mammals since European settlement  John C. Z. Woinarski, Andrew A. Burbidge, and Peter L. Harrison Physical Sciences Applied Physical Sciences Probing equilibrium glass flow up to exapoise viscosities Eva Arianna Aurelia Pogna, Cristian Rodríguez-Tinoco, Giulio Cerullo, Carino Ferrante, Javier Rodríguez-Viejo, and Tullio Scopigno Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae  Junjing Deng, David J. Vine, Si Chen, Youssef S. G. Nashed, Qiaoling Jin, Nicholas W. Phillips, Tom Peterka, Rob Ross, Stefan Vogt, and Chris J. Jacobsen Lack of exercise leads to significant and reversible loss of scale invariance in both aged and young mice Changgui Gu, Claudia P. Coomans, Kun Hu, Frank A. J. L. Scheer, H. Eugene Stanley, and Johanna H. Meijer Toward link predictability of complex networks  Linyuan Lü, Liming Pan, Tao Zhou, Yi-Cheng Zhang, and H. Eugene Stanley Chemistry Efficient solar-to-fuels production from a hybrid microbial–water-splitting catalyst system  Joseph P. Torella, Christopher J. Gagliardi, Janice S. Chen, D. Kwabena Bediako, Brendan Colón, Jeffery C. Way, Pamela A. Silver, and Daniel G. Nocera Mechanism of initiation of aggregation of p53 revealed by Φ-value analysis GuoZhen Wang and Alan R. Fersht Highly efficient conversion of superoxide to oxygen using hydrophilic carbon clusters Errol L. G. Samuel, Daniela C. Marcano, Vladimir Berka, Brittany R. Bitner, Gang Wu, Austin Potter, Roderic H. Fabian, Robia G. Pautler, Thomas A. Kent, Ah-Lim Tsai, and James M. Tour Propagation of aggregated p53: Cross-reaction and coaggregation vs. seeding GuoZhen Wang and Alan R. Fersht De novo production of the plant-derived alkaloid strictosidine in yeast  Stephanie Brown, Marc Clastre, Vincent Courdavault, and Sarah E. O'Connor Earth, Atmospheric, and Planetary Sciences Erosion during extreme flood events dominates Holocene canyon evolution in northeast Iceland  Edwin R. C. Baynes, Mikaël Attal, Samuel Niedermann, Linda A. Kirstein, Andrew J. Dugmore, and Mark Naylor Widespread pollution of the South American atmosphere predates the industrial revolution by 240 y Chiara Uglietti, Paolo Gabrielli, Colin A. Cooke, Paul Vallelonga, and Lonnie G. Thompson Engineering Visualizing monolayers with a water-soluble fluorophore to quantify adsorption, desorption, and the double layer Ian C. Shieh and Joseph A. Zasadzinski Physics Greedy scheduling of cellular self-replication leads to optimal doubling times with a log-Frechet distribution  Rami Pugatch Warning signals for eruptive events in spreading fires Jerome M. Fox and George M. Whitesides The second laws of quantum thermodynamics Fernando Brandão, Michał Horodecki, Nelly Ng, Jonathan Oppenheim, and Stephanie Wehner Critical and maximally informative encoding between neural populations in the retina  David B. Kastner, Stephen A. Baccus, and Tatyana O. Sharpee Correlation between ground state and orbital anisotropy in heavy fermion materials  Thomas Willers, Fabio Strigari, Zhiwei Hu, Violetta Sessi, Nicholas B. Brookes, Eric D. Bauer, John L. Sarrao, J. D. Thompson, Arata Tanaka, Steffen Wirth, Liu Hao Tjeng, and Andrea Severing Calorimetric glass transition in a mean-field theory approach Manuel Sebastian Mariani, Giorgio Parisi, and Corrado Rainone Statistics Massively expedited genome-wide heritability analysis (MEGHA)  Tian Ge, Thomas E. Nichols, Phil H. Lee, Avram J. Holmes, Joshua L. Roffman, Randy L. Buckner, Mert R. Sabuncu, and Jordan W. Smoller Social Sciences Psychological and Cognitive Sciences Human language reveals a universal positivity bias  Peter Sheridan Dodds, Eric M. Clark, Suma Desu, Morgan R. Frank, Andrew J. Reagan, Jake Ryland Williams, Lewis Mitchell, Kameron Decker Harris, Isabel M. Kloumann, James P. Bagrow, Karine Megerdoomian, Matthew T. McMahon, Brian F. Tivnan, and Christopher M. Danforth Epigenetic modification of the oxytocin receptor gene influences the perception of anger and fear in the human brain  Meghan H. Puglia, Travis S. Lillard, James P. Morris, and Jessica J. Connelly Biological Sciences Applied Biological Sciences Glucose-responsive insulin activity by covalent modification with aliphatic phenylboronic acid conjugates Danny Hung-Chieh Chou, Matthew J. Webber, Benjamin C. Tang, Amy B. Lin, Lavanya S. Thapa, David Deng, Jonathan V. Truong, Abel B. Cortinas, Robert Langer, and Daniel G. Anderson Biochemistry Tetrahydrobiopterin and alkylglycerol monooxygenase substantially alter the murine macrophage lipidome  Katrin Watschinger, Markus A. Keller, Eileen McNeill, Mohammad T. Alam, Steven Lai, Sabrina Sailer, Veronika Rauch, Jyoti Patel, Albin Hermetter, Georg Golderer, Stephan Geley, Gabriele Werner-Felmayer, Robert S. Plumb, Giuseppe Astarita, Markus Ralser, Keith M. Channon, and Ernst R. Werner In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state Jennifer L. McGinnis, Qi Liu, Christopher A. Lavender, Aishwarya Devaraj, Sean P. McClory, Kurt Fredrick, and Kevin M. Weeks Structures of the Gβ-CCT and PhLP1–Gβ-CCT complexes reveal a mechanism for G-protein β-subunit folding and Gβγ dimer assembly Rebecca L. Plimpton, Jorge Cuéllar, Chun Wan J. Lai, Takuma Aoba, Aman Makaju, Sarah Franklin, Andrew D. Mathis, John T. Prince, José L. Carrascosa, José M. Valpuesta, and Barry M. Willardson Thermodynamic mechanism for inhibition of lactose permease by the phosphotransferase protein IIAGlc Parameswaran Hariharan, Dhandayuthapani Balasubramaniam, Alan Peterkofsky, H. Ronald Kaback, and Lan Guan C-terminal sequence of amyloid-resistant type F apolipoprotein A-II inhibits amyloid fibril formation of apolipoprotein A-II in mice Jinko Sawashita, Beiru Zhang, Kazuhiro Hasegawa, Masayuki Mori, Hironobu Naiki, Fuyuki Kametani, and Keiichi Higuchi Visualization of a radical B12 enzyme with its G-protein chaperone Marco Jost, Valentin Cracan, Paul A. Hubbard, Ruma Banerjee, and Catherine L. Drennan De novo production of the plant-derived alkaloid strictosidine in yeast  Stephanie Brown, Marc Clastre, Vincent Courdavault, and Sarah E. O'Connor Biophysics and Computational Biology Mechanism of initiation of aggregation of p53 revealed by Φ-value analysis GuoZhen Wang and Alan R. Fersht Visualizing monolayers with a water-soluble fluorophore to quantify adsorption, desorption, and the double layer Ian C. Shieh and Joseph A. Zasadzinski Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae  Junjing Deng, David J. Vine, Si Chen, Youssef S. G. Nashed, Qiaoling Jin, Nicholas W. Phillips, Tom Peterka, Rob Ross, Stefan Vogt, and Chris J. Jacobsen Lemon-shaped halo archaeal virus His1 with uniform tail but variable capsid structure  Chuan Hong, Maija K. Pietilä, Caroline J. Fu, Michael F. Schmid, Dennis H. Bamford, and Wah Chiu Bacterial chemoreceptor dynamics correlate with activity state and are coupled over long distances Dipanjan Samanta, Peter P. Borbat, Boris Dzikovski, Jack H. Freed, and Brian R. Crane Localizing a gate in CFTR Xiaolong Gao and Tzyh-Chang Hwang Propagation of aggregated p53: Cross-reaction and coaggregation vs. seeding GuoZhen Wang and Alan R. Fersht Cell Biology Rectifier of aberrant mRNA splicing recovers tRNA modification in familial dysautonomia Mayumi Yoshida, Naoyuki Kataoka, Kenjyo Miyauchi, Kenji Ohe, Kei Iida, Suguru Yoshida, Takayuki Nojima, Yukiko Okuno, Hiroshi Onogi, Tomomi Usui, Akihide Takeuchi, Takamitsu Hosoya, Tsutomu Suzuki, and Masatoshi Hagiwara Silencing LRH-1 in colon cancer cell lines impairs proliferation and alters gene expression programs  James R. Bayrer, Sridevi Mukkamala, Elena P. Sablin, Paul Webb, and Robert J. Fletterick Cholesterol uptake disruption, in association with chemotherapy, is a promising combined metabolic therapy for pancreatic adenocarcinoma Fabienne Guillaumond, Ghislain Bidaut, Mehdi Ouaissi, Stéphane Servais, Victoire Gouirand, Orianne Olivares, Sophie Lac, Laurence Borge, Julie Roques, Odile Gayet, Michelle Pinault, Cyrille Guimaraes, Jérémy Nigri, Céline Loncle, Marie-Noëlle Lavaut, Stéphane Garcia, Anne Tailleux, Bart Staels, Ezequiel Calvo, Richard Tomasini, Juan Lucio Iovanna, and Sophie Vasseur Ecology Rapid behavioral maturation accelerates failure of stressed honey bee colonies Clint J. Perry, Eirik Søvik, Mary R. Myerscough, and Andrew B. Barron Evolution Convergence of ion channel genome content in early animal evolution Benjamin J. Liebeskind, David M. Hillis, and Harold H. Zakon Genetics Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations Mingkun Li, Roland Schröder, Shengyu Ni, Burkhard Madea, and Mark Stoneking Massively expedited genome-wide heritability analysis (MEGHA)  Tian Ge, Thomas E. Nichols, Phil H. Lee, Avram J. Holmes, Joshua L. Roffman, Randy L. Buckner, Mert R. Sabuncu, and Jordan W. Smoller Epigenetic modification of the oxytocin receptor gene influences the perception of anger and fear in the human brain  Meghan H. Puglia, Travis S. Lillard, James P. Morris, and Jessica J. Connelly Constraints on the evolution of a doublesex target gene arising from doublesex's pleiotropic deployment  Shengzhan D. Luo and Bruce S. Baker Immunology and Inflammation Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles Daniel Gadala-Maria, Gur Yaari, Mohamed Uduman, and Steven H. Kleinstein Extracellular forms of IL-37 inhibit innate inflammation in vitro and in vivo but require the IL-1 family decoy receptor IL-1R8 Suzhao Li, C. Preston Neff, Kristina Barber, Jaewoo Hong, Yuchun Luo, Tania Azam, Brent E. Palmer, Mayumi Fujita, Cecilia Garlanda, Alberto Mantovani, Soohyun Kim, and Charles Anthony Dinarello Medical Sciences Transplantation of bovine adrenocortical cells encapsulated in alginate  Mariya Balyura, Evgeny Gelfgat, Monika Ehrhart-Bornstein, Barbara Ludwig, Zohar Gendler, Uriel Barkai, Baruch Zimerman, Avi Rotem, Norman L. Block, Andrew V. Schally, and Stefan R. Bornstein Glucagon receptor antibody completely suppresses type 1 diabetes phenotype without insulin by disrupting a novel diabetogenic pathway May-Yun Wang, Hai Yan, Zhiqing Shi, Matthew R. Evans, Xinxin Yu, Young Lee, Shiuhwei Chen, Annie Williams, Jacques Philippe, Michael G. Roth, and Roger H. Unger Low expression of CD39 on regulatory T cells as a biomarker for resistance to methotrexate therapy in rheumatoid arthritis Raphael Sanches Peres, Foo Y. Liew, Jhimmy Talbot, Vanessa Carregaro, Rene D. Oliveira, Sergio L. Almeida, Rafael F. O. França, Paula B. Donate, Larissa G. Pinto, Flavia I. S. Ferreira, Diego L. Costa, Daniel P. Demarque, Dayana Rubio Gouvea, Norberto P. Lopes, Regina Helena C. Queiroz, Joao Santana Silva, Florencio Figueiredo, Jose Carlos Alves-Filho, Thiago M. Cunha, Sérgio H. Ferreira, Paulo Louzada-Junior, and Fernando Q. Cunha Discovery and horizontal follow-up of an autoantibody signature in human prostate cancer  Paul J. Mintz, Anna Cecilia Rietz, Marina Cardó-Vila, Michael G. Ozawa, Eleonora Dondossola, Kim-Anh Do, Jeri Kim, Patricia Troncoso, Christopher J. Logothetis, Richard L. Sidman, Renata Pasqualini, and Wadih Arap Ligand-directed targeting of lymphatic vessels uncovers mechanistic insights in melanoma metastasis  Dawn R. Christianson, Andrey S. Dobroff, Bettina Proneth, Amado J. Zurita, Ahmad Salameh, Eleonora Dondossola, Jun Makino, Cristian G. Bologa, Tracey L. Smith, Virginia J. Yao, Tiffany L. Calderone, David J. O'Connell, Tudor I. Oprea, Kazunori Kataoka, Dolores J. Cahill, Jeffrey E. Gershenwald, Richard L. Sidman, Wadih Arap, and Renata Pasqualini Microbiology Dysregulation of Escherichia coli α-hemolysin expression alters the course of acute and persistent urinary tract infection Kanna Nagamatsu, Thomas J. Hannan, Randi L. Guest, Maria Kostakioti, Maria Hadjifrangiskou, Jana Binkley, Karen Dodson, Tracy L. Raivio, and Scott J. Hultgren Neuroscience Autism-associated mutation inhibits protein kinase C-mediated neuroligin-4X enhancement of excitatory synapses Michael A. Bemben, Quynh-Anh Nguyen, Tongguang Wang, Yan Li, Roger A. Nicoll, and Katherine W. Roche Metabolic resting-state brain networks in health and disease Phoebe G. Spetsieris, Ji Hyun Ko, Chris C. Tang, Amir Nazem, Wataru Sako, Shichun Peng, Yilong Ma, Vijay Dhawan, and David Eidelberg Oxalic acid and diacylglycerol 36:3 are cross-species markers of sleep debt Aalim M. Weljie, Peter Meerlo, Namni Goel, Arjun Sengupta, Matthew S. Kayser, Ted Abel, Morris J. Birnbaum, David F. Dinges, and Amita Sehgal Feedback stabilizes propagation of synchronous spiking in cortical neural networks Samat Moldakarimov, Maxim Bazhenov, and Terrence J. Sejnowski Critical and maximally informative encoding between neural populations in the retina  David B. Kastner, Stephen A. Baccus, and Tatyana O. Sharpee Gustatory and metabolic perception of nutrient stress in Drosophila Nancy J. Linford, Jennifer Ro, Brian Y. Chung, and Scott D. Pletcher Elevated intraocular pressure decreases response sensitivity of inner retinal neurons in experimental glaucoma mice Ji-Jie Pang, Benjamin J. Frankfort, Ronald L. Gross, and Samuel M. Wu Interplay of approximate planning strategies Quentin J. M. Huys, Níall Lally, Paul Faulkner, Neir Eshel, Erich Seifritz, Samuel J. Gershman, Peter Dayan, and Jonathan P. Roiser Brain 5-HT deficiency increases stress vulnerability and impairs antidepressant responses following psychosocial stress Benjamin D. Sachs, Jason R. Ni, and Marc G. Caron Etiology of distinct membrane excitability in pre- and posthearing auditory neurons relies on activity of Cl− channel TMEM16A Xiao-Dong Zhang, Jeong-Han Lee, Ping Lv, Wei Chun Chen, Hyo Jeong Kim, Dongguang Wei, Wenying Wang, Choong-Ryoul Sihn, Karen Jo Doyle, Jason R. Rock, Nipavan Chiamvimonvat, and Ebenezer N. Yamoah Neuroinflammation triggered by β-glucan/dectin-1 signaling enables CNS axon regeneration Katherine T. Baldwin, Kevin S. Carbajal, Benjamin M. Segal, and Roman J. Giger Contribution of reactive oxygen species to cerebral amyloid angiopathy, vasomotor dysfunction, and microhemorrhage in aged Tg2576 mice  Byung Hee Han, Meng-liang Zhou, Andrew W. Johnson, Itender Singh, Fan Liao, Ananth K. Vellimana, James W. Nelson, Eric Milner, John R. Cirrito, Jacob Basak, Min Yoo, Hans H. Dietrich, David M. Holtzman, and Gregory Joseph Zipfel Increased dopamine D2 receptor activity in the striatum alters the firing pattern of dopamine neurons in the ventral tegmental area Sabine Krabbe, Johanna Duda, Julia Schiemann, Christina Poetschke, Gaby Schneider, Eric R. Kandel, Birgit Liss, Jochen Roeper, and Eleanor H. Simpson Pharmacology MmTX1 and MmTX2 from coral snake venom potently modulate GABAA receptor activity Jean-Pierre Rosso, Jürgen R. Schwarz, Marcelo Diaz-Bustamante, Brigitte Céard, José M. Gutiérrez, Matthias Kneussel, Olaf Pongs, Frank Bosmans, and Pierre E. Bougis Physiology SLO3 auxiliary subunit LRRC52 controls gating of sperm KSPER currents and is critical for normal fertility Xu-Hui Zeng, Chengtao Yang, Xiao-Ming Xia, Min Liu, and Christopher J. Lingle Lack of exercise leads to significant and reversible loss of scale invariance in both aged and young mice Changgui Gu, Claudia P. Coomans, Kun Hu, Frank A. J. L. Scheer, H. Eugene Stanley, and Johanna H. Meijer Plant Biology FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice Shojiro Tamaki, Hiroyuki Tsuji, Ayana Matsumoto, Akiko Fujita, Zenpei Shimatani, Rie Terada, Tomoaki Sakamoto, Tetsuya Kurata, and Ko Shimamoto Arabidopsis OR proteins are the major posttranscriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Xiangjun Zhou, Ralf Welsch, Yong Yang, Daniel Álvarez, Matthias Riediger, Hui Yuan, Tara Fish, Jiping Liu, Theodore W. Thannhauser, and Li Li Psychological and Cognitive Sciences Human language reveals a universal positivity bias  Peter Sheridan Dodds, Eric M. Clark, Suma Desu, Morgan R. Frank, Andrew J. Reagan, Jake Ryland Williams, Lewis Mitchell, Kameron Decker Harris, Isabel M. Kloumann, James P. Bagrow, Karine Megerdoomian, Matthew T. McMahon, Brian F. Tivnan, and Christopher M. Danforth Coincidence avoidance principle in surface haptic interpretation Steven G. Manuel, Roberta L. Klatzky, Michael A. Peshkin, and James Edward Colgate Systems Biology Greedy scheduling of cellular self-replication leads to optimal doubling times with a log-Frechet distribution  Rami Pugatch Efficient solar-to-fuels production from a hybrid microbial–water-splitting catalyst system  Joseph P. Torella, Christopher J. Gagliardi, Janice S. Chen, D. Kwabena Bediako, Brendan Colón, Jeffery C. Way, Pamela A. Silver, and Daniel G. Nocera Corrections Correction for Charlesworth, Causes of natural variation in fitness: Evidence from studies of Drosophila populations Correction for Rockwell et al., Eukaryotic algal phytochromes span the visible spectrum Correction for Watts et al., Bioluminescence imaging of Aβ deposition in bigenic mouse models of Alzheimer Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (.......)  Customer Service * 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2015 by the National Academy of Sciences