Cień dnia (1): Fwd: PNAS Section Alert for 30 Jul 2013

---------- Forwarded message ----------
From: <pnas-mailer@alerts.stanford.edu>
Date: Wed, Jul 31, 2013 at 8:15 AM
Subject: PNAS Section Alert for 30 Jul 2013
To: pascal.alter@gmail.com

Proceedings of the National Academy of Sciences

Early Edition articles for 30 July 2013

Commentary

Rapid accumulation of committed sea-level rise from global warming: Benjamin H. Strauss

Biological Sciences

Genetics

Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma: Jared J. Gartner, Stephen C. J. Parker, Todd D. Prickett, Ken Dutton-Regester, Michael L. Stitzel, Jimmy C. Lin, Sean Davis, Vijaya L. Simhadri, Sujata Jha, Nobuko Katagiri, Valer Gotea, Jamie K. Teer, Xiaomu Wei, Mario A. Morken, Umesh K. Bhanot, NISC Comparative Sequencing Program, Guo Chen, Laura L. Elnitski, Michael A. Davies, Jeffrey E. Gershenwald, Hannah Carter, Rachel Karchin, William Robinson, Steven Robinson, Steven A. Rosenberg, Francis S. Collins, Giovanni Parmigiani, Anton A. Komar, Chava Kimchi-Sarfaty, Nicholas K. Hayward, Elliott H. Margulies, and Yardena Samuels

Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing OPEN ACCESS ARTICLE: Xiangyang Xu, Liang Zeng, Ye Tao, Tri Vuong, Jinrong Wan, Roger Boerma, Jim Noe, Zenglu Li, Steve Finnerty, Safiullah M. Pathan, J. Grover Shannon, and Henry T. Nguyen

Genetic measurement of memory B-cell recall using antibody repertoire sequencing OPEN ACCESS ARTICLE: Christopher Vollmers, Rene V. Sit, Joshua A. Weinstein, Cornelia L. Dekker, and Stephen R. Quake

Break-induced replication occurs by conservative DNA synthesis: Roberto A. Donnianni and Lorraine S. Symington

Biochemistry

Microsatellite-encoded domain in rodent Sry functions as a genetic capacitor to enable the rapid evolution of biological novelty: Yen-Shan Chen, Joseph D. Racca, Paul W. Sequeira, Nelson B. Phillips, and Michael A. Weiss

COPI buds 60-nm lipid droplets from reconstituted water–phospholipid–triacylglyceride interfaces, suggesting a tension clamp function: Abdou Rachid Thiam, Bruno Antonny, Jing Wang, Jérôme Delacotte, Florian Wilfling, Tobias C. Walther, Rainer Beck, James E. Rothman, and Frédéric Pincet

Nucleobases bind to and stabilize aggregates of a prebiotic amphiphile, providing a viable mechanism for the emergence of protocells: Roy A. Black, Matthew C. Blosser, Benjamin L. Stottrup, Ravi Tavakley, David W. Deamer, and Sarah L. Keller

Human eIF4E promotes mRNA restructuring by stimulating eIF4A helicase activity: Kateryna Feoktistova, Enkhee Tuvshintogs, Angelie Do, and Christopher S. Fraser

Structural basis of Vps33A recruitment to the human HOPS complex by Vps16 OPEN ACCESS ARTICLE: Stephen C. Graham, Lena Wartosch, Sally R. Gray, Edward J. Scourfield, Janet E. Deane, J. Paul Luzio, and David J. Owen

Polyglutamine domain flexibility mediates the proximity between flanking sequences in huntingtin OPEN ACCESS ARTICLE: Nicholas Stephane Caron, Carly Robyn Desmond, Jianrun Xia, and Ray Truant

Prereplicative repair of oxidized bases in the human genome is mediated by NEIL1 DNA glycosylase together with replication proteins: Muralidhar L. Hegde, Pavana M. Hegde, Larry J. Bellot, Santi M. Mandal, Tapas K. Hazra, Guo-Min Li, Istvan Boldogh, Alan E. Tomkinson, and Sankar Mitra

Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing: Matthew Pratt-Hyatt, Dave A. Pai, Rebecca A. Haeusler, Glenn G. Wozniak, Paul D. Good, Erin L. Miller, Ian X. McLeod, John R. Yates III, Anita K. Hopper, and David R. Engelke

Identification of the molecular attributes required for aminoglycoside activity against Leishmania: Moran Shalev, Jiro Kondo, Dmitry Kopelyanskiy, Charles L. Jaffe, Noam Adir, and Timor Baasov

Insight into mechanisms of 3′-5′ exonuclease activity and removal of bulky 8,5′-cyclopurine adducts by apurinic/apyrimidinic endonucleases OPEN ACCESS ARTICLE: Abdelghani Mazouzi, Armelle Vigouroux, Bulat Aikeshev, Philip J. Brooks, Murat K. Saparbaev, Solange Morera, and Alexander A. Ishchenko

Biophysics and Computational Biology

How hydrophobic drying forces impact the kinetics of molecular recognition: Jagannath Mondal, Joseph A. Morrone, and B. J. Berne

Effect of cholesterol nanodomains on monolayer morphology and dynamics: KyuHan Kim, Siyoung Q. Choi, Zachary A. Zell, Todd M. Squires, and Joseph A. Zasadzinski

Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues OPEN ACCESS ARTICLE: Rahul K. Das and Rohit V. Pappu

Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain: Andrew B. Ward, Paul Szewczyk, Vinciane Grimard, Chang-Wook Lee, Lorena Martinez, Rupak Doshi, Alexandra Caya, Mark Villaluz, Els Pardon, Cristina Cregger, Douglas J. Swartz, Pierre Guy Falson, Ina L. Urbatsch, Cedric Govaerts, Jan Steyaert, and Geoffrey Chang

Structural and dynamic studies of the transcription factor ERG reveal DNA binding is allosterically autoinhibited: Michael C. Regan, Peter S. Horanyi, Edward E. Pryor, Jr., Jessica L. Sarver, David S. Cafiso, and John H. Bushweller

Membrane extraction of Rab proteins by GDP dissociation inhibitor characterized using attenuated total reflection infrared spectroscopy: Konstantin Gavriljuk, Aymelt Itzen, Roger S. Goody, Klaus Gerwert, and Carsten Kötting

Random network peristalsis in Physarum polycephalum organizes fluid flows across an individual: Karen Alim, Gabriel Amselem, François Peaudecerf, Michael P. Brenner, and Anne Pringle

Lipid bilayer and cytoskeletal interactions in a red blood cell OPEN ACCESS ARTICLE: Zhangli Peng, Xuejin Li, Igor V. Pivkin, Ming Dao, George E. Karniadakis, and Subra Suresh

Characterization of an early-stage fusion intermediate of Sindbis virus using cryoelectron microscopy: Sheng Cao and Wei Zhang

Coarse-grained, foldable, physical model of the polypeptide chain: Promita Chakraborty and Ronald N. Zuckermann

Cell Biology

Selective activation of oxidized PTP1B by the thioredoxin system modulates PDGF-β receptor tyrosine kinase signaling OPEN ACCESS ARTICLE: Markus Dagnell, Jeroen Frijhoff, Irina Pader, Martin Augsten, Benoit Boivin, Jianqiang Xu, Pankaj K. Mandal, Nicholas K. Tonks, Carina Hellberg, Marcus Conrad, Elias S. J. Arnér, and Arne Östman

Aurora B and Cdk1 mediate Wapl activation and release of acetylated cohesin from chromosomes by phosphorylating Sororin: Tomoko Nishiyama, Martina M. Sykora, Pim J. Huis in 't Veld, Karl Mechtler, and Jan-Michael Peters

Protective effect of mitochondria-targeted antioxidants in an acute bacterial infection: Egor Y. Plotnikov, Maria A. Morosanova, Irina B. Pevzner, Ljubava D. Zorova, Vasily N. Manskikh, Natalya V. Pulkova, Svetlana I. Galkina, Vladimir P. Skulachev, and Dmitry B. Zorov

Physiology