Fwd: PNAS Table of Contents for 3 December 2013; Vol. 110, No. 49

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Proceedings of the National Academy of Sciences 3 December 2013; Vol. 110, No. 49 This Week in PNAS In This Issue QnAs QnAs with Daniel Schacter Prashant Nair Profile Profile of Martin Karplus, Michael Levitt, and Arieh Warshel, 2013 Nobel Laureates in Chemistry Alan R. Fersht Commentaries Environmental reprogramming and molecular profiling in reconstitution of human hair follicles Erin L. Weber and Cheng-Ming Chuong Forecasting long-term gas production from shale Luis Cueto-Felgueroso and Ruben Juanes Structure of Escherichia coli RNA polymerase holoenzyme at last Lucia B. Rothman-Denes Genomic instability and repair mediated by common repeated sequences Inbal Gazy and Martin Kupiec Chronic arsenic exposure and microbial drug resistance Malcolm J. McConville and Stuart A. Ralph PNAS Plus Significance Statements PNAS Plus Significance Statements Brief statements written by the authors about the significance of their papers. Feature Article Microenvironmental reprogramming by three-dimensional culture enables dermal papilla cells to induce de novo human hair-follicle growth Claire A. Higgins, James C. Chen, Jane E. Cerise, Colin A. B. Jahoda, and Angela M. Christiano Physical Sciences Applied Physical Sciences Distribution of directional change as a signature of complex dynamics Stanislav Burov, S. M. Ali Tabei, Toan Huynh, Michael P. Murrell, Louis H. Philipson, Stuart A. Rice, Margaret L. Gardel, Norbert F. Scherer, and Aaron R. Dinner High-fidelity gates in quantum dot spin qubits Teck Seng Koh, S. N. Coppersmith, and Mark Friesen Chemistry Electrochemical tuning of vertically aligned MoS2 nanofilms and its application in improving hydrogen evolution reaction Haotian Wang, Zhiyi Lu, Shicheng Xu, Desheng Kong, Judy J. Cha, Guangyuan Zheng, Po-Chun Hsu, Kai Yan, David Bradshaw, Fritz B. Prinz, and Yi Cui Phototropic growth control of nanoscale pattern formation in photoelectrodeposited Se–Te films  Bryce Sadtler, Stanley P. Burgos, Nicolas A. Batara, Joseph A. Beardslee, Harry A. Atwater, and Nathan S. Lewis RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain  Sarah Picaud, Christopher Wells, Ildiko Felletar, Deborah Brotherton, Sarah Martin, Pavel Savitsky, Beatriz Diez-Dacal, Martin Philpott, Chas Bountra, Hannah Lingard, Oleg Fedorov, Susanne Müller, Paul E. Brennan, Stefan Knapp, and Panagis Filippakopoulos Diffusion modifies the connectivity of kinetic schemes for multisite binding and catalysis Irina V. Gopich and Attila Szabo Earth, Atmospheric, and Planetary Sciences Spontaneous abrupt climate change due to an atmospheric blocking–sea-ice–ocean feedback in an unforced climate model simulation Sybren Drijfhout, Emily Gleeson, Henk A. Dijkstra, and Valerie Livina Greenland ice sheet motion insensitive to exceptional meltwater forcing Andrew J. Tedstone, Peter W. Nienow, Andrew J. Sole, Douglas W. F. Mair, Thomas R. Cowton, Ian D. Bartholomew, and Matt A. King Engineering Real-time, high-resolution study of nanocrystallization and fatigue cracking in a cyclically strained metallic glass  Cheng-Cai Wang, Yun-Wei Mao, Zhi-Wei Shan, Ming Dao, Ju Li, Jun Sun, Evan Ma, and Subra Suresh Gas production in the Barnett Shale obeys a simple scaling theory   Tad W. Patzek, Frank Male, and Michael Marder Environmental Sciences Arctic sea-ice decline archived by multicentury annual-resolution record from crustose coralline algal proxy Jochen Halfar, Walter H. Adey, Andreas Kronz, Steffen Hetzinger, Evan Edinger, and William W. Fitzhugh Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism Matthew J. Sullivan, Andrew J. Gates, Corinne Appia-Ayme, Gary Rowley, and David J. Richardson Social Sciences Environmental Sciences Effect of the Fukushima nuclear accident on the risk perception of residents near a nuclear power plant in China  Lei Huang, Ying Zhou, Yuting Han, James K. Hammitt, Jun Bi, and Yang Liu Psychological and Cognitive Sciences Neural mechanisms of reactivation-induced updating that enhance and distort memory  Peggy L. St. Jacques, Christopher Olm, and Daniel L. Schacter Biological Sciences Applied Biological Sciences Design and formulation of functional pluripotent stem cell-derived cardiac microtissues  Nimalan Thavandiran, Nicole Dubois, Alexander Mikryukov, Stéphane Massé, Bogdan Beca, Craig A. Simmons, Vikram S. Deshpande, J. Patrick McGarry, Christopher S. Chen, Kumaraswamy Nanthakumar, Gordon M. Keller, Milica Radisic, and Peter W. Zandstra Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth  Emily M. Trentacoste, Roshan P. Shrestha, Sarah R. Smith, Corine Glé, Aaron C. Hartmann, Mark Hildebrand, and William H. Gerwick Biochemistry RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain  Sarah Picaud, Christopher Wells, Ildiko Felletar, Deborah Brotherton, Sarah Martin, Pavel Savitsky, Beatriz Diez-Dacal, Martin Philpott, Chas Bountra, Hannah Lingard, Oleg Fedorov, Susanne Müller, Paul E. Brennan, Stefan Knapp, and Panagis Filippakopoulos Interaction between human Ctf4 and the Cdc45/Mcm2-7/GINS (CMG) replicative helicase Young-Hoon Kang, Andrea Farina, Vladimir P. Bermudez, Inger Tappin, Fang Du, Wiebke Chemnitz Galal, and Jerard Hurwitz Pyrethroid activity-based probes for profiling cytochrome P450 activities associated with insecticide interactions  Hanafy M. Ismail, Paul M. O'Neill, David W. Hong, Robert D. Finn, Colin J. Henderson, Aaron T. Wright, Benjamin F. Cravatt, Janet Hemingway, and Mark J. I. Paine Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of σ70 domain 1.1 Brian Bae, Elizabeth Davis, Daniel Brown, Elizabeth A. Campbell, Sivaramesh Wigneshweraraj, and Seth A. Darst Selective regulation of cyclic nucleotide phosphodiesterase PDE3A isoforms Fabrice Vandeput, Nicolas Szabo-Fresnais, Faiyaz Ahmad, Changwon Kho, Ahyoung Lee, Judith Krall, Allan Dunlop, Mark W. Hazel, James A. Wohlschlegel, Roger J. Hajjar, Miles D. Houslay, Vincent C. Manganiello, and Matthew A. Movsesian Biophysics and Computational Biology Free-energy landscape of protein oligomerization from atomistic simulations Alessandro Barducci, Massimiliano Bonomi, Meher K. Prakash, and Michele Parrinello Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin Michael T. Lerch, Joseph Horwitz, John McCoy, and Wayne L. Hubbell Distribution of directional change as a signature of complex dynamics Stanislav Burov, S. M. Ali Tabei, Toan Huynh, Michael P. Murrell, Louis H. Philipson, Stuart A. Rice, Margaret L. Gardel, Norbert F. Scherer, and Aaron R. Dinner Diffusion modifies the connectivity of kinetic schemes for multisite binding and catalysis Irina V. Gopich and Attila Szabo Quantifying causal emergence shows that macro can beat micro Erik P. Hoel, Larissa Albantakis, and Giulio Tononi Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models  Erik G. Marklund, Anel Mahmutovic, Otto G. Berg, Petter Hammar, David van der Spoel, David Fange, and Johan Elf Cell Biology Rho GTPases orient directional sensing in chemotaxis Yu Wang, Hiroshi Senoo, Hiromi Sesaki, and Miho Iijima Exposure of MC4R to agonist in the endoplasmic reticulum stabilizes an active conformation of the receptor that does not desensitize Susana Granell, Brent M. Molden, and Giulia Baldini Nonmuscle myosin II powered transport of newly formed collagen fibrils at the plasma membrane  Nicholas S. Kalson, Tobias Starborg, Yinhui Lu, Aleksandr Mironov, Sally M. Humphries, David F. Holmes, and Karl E. Kadler RNA-sequencing from single nuclei Rashel V. Grindberg, Joyclyn L. Yee-Greenbaum, Michael J. McConnell, Mark Novotny, Andy L. O'Shaughnessy, Georgina M. Lambert, Marcos J. Araúzo-Bravo, Jun Lee, Max Fishman, Gillian E. Robbins, Xiaoying Lin, Pratap Venepally, Jonathan H. Badger, David W. Galbraith, Fred H. Gage, and Roger S. Lasken Genes involved in centrosome-independent mitotic spindle assembly in Drosophila S2 cells Sara Moutinho-Pereira, Nico Stuurman, Olga Afonso, Marten Hornsveld, Paulo Aguiar, Gohta Goshima, Ronald D. Vale, and Helder Maiato Analysis of DNA methylation reveals a partial reprogramming of the Müller glia genome during retina regeneration Curtis Powell, Ana R. Grant, Eli Cornblath, and Daniel Goldman Control of creatine metabolism by HIF is an endogenous mechanism of barrier regulation in colitis Louise E. Glover, Brittelle E. Bowers, Bejan Saeedi, Stefan F. Ehrentraut, Eric L. Campbell, Amanda J. Bayless, Evgenia Dobrinskikh, Agnieszka A. Kendrick, Caleb J. Kelly, Adrianne Burgess, Lauren Miller, Douglas J. Kominsky, Paul Jedlicka, and Sean P. Colgan Developmental Biology Microenvironmental reprogramming by three-dimensional culture enables dermal papilla cells to induce de novo human hair-follicle growth Claire A. Higgins, James C. Chen, Jane E. Cerise, Colin A. B. Jahoda, and Angela M. Christiano Dislocation is a developmental mechanism in Dictyostelium and vertebrates Antony J. Durston Ecology Symbiotic bacteria appear to mediate hyena social odors Kevin R. Theis, Arvind Venkataraman, Jacquelyn A. Dycus, Keith D. Koonter, Emily N. Schmitt-Matzen, Aaron P. Wagner, Kay E. Holekamp, and Thomas M. Schmidt Environmental Sciences Deep ocean communities impacted by changing climate over 24 y in the abyssal northeast Pacific Ocean  Kenneth L. Smith, Jr., Henry A. Ruhl, Mati Kahru, Christine L. Huffard, and Alana D. Sherman Evolution Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters Vanessa Zanni, Angéline Eymery, Michael Coiffet, Matthias Zytnicki, Isabelle Luyten, Hadi Quesneville, Chantal Vaury, and Silke Jensen Reintroducing domesticated wild mice to sociality induces adaptive transgenerational effects on MUP expression Adam C. Nelson, Joseph W. Cauceglia, Seth D. Merkley, Neil A. Youngson, Andrew J. Oler, Randy J. Nelson, Bradley R. Cairns, Emma Whitelaw, and Wayne K. Potts Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae Yoosook Lee, Clare D. Marsden, Laura C. Norris, Travis C. Collier, Bradley J. Main, Abdrahamane Fofana, Anthony J. Cornel, and Gregory C. Lanzaro Bacterial natural transformation by highly fragmented and damaged DNA  Søren Overballe-Petersen, Klaus Harms, Ludovic A. A. Orlando, J. Victor Moreno Mayar, Simon Rasmussen, Tais W. Dahl, Minik T. Rosing, Anthony M. Poole, Thomas Sicheritz-Ponten, Søren Brunak, Sabrina Inselmann, Johann de Vries, Wilfried Wackernagel, Oliver G. Pybus, Rasmus Nielsen, Pål Jarle Johnsen, Kaare Magne Nielsen, and Eske Willerslev Genetics Genome rearrangements caused by interstitial telomeric sequences in yeast  Anna Y. Aksenova, Patricia W. Greenwell, Margaret Dominska, Alexander A. Shishkin, Jane C. Kim, Thomas D. Petes, and Sergei M. Mirkin High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing  Dianne I. Lou, Jeffrey A. Hussmann, Ross M. McBee, Ashley Acevedo, Raul Andino, William H. Press, and Sara L. Sawyer Centromere proteins CENP-C and CAL1 functionally interact in meiosis for centromere clustering, pairing, and chromosome segregation  Yingdee Unhavaithaya and Terry L. Orr-Weaver Immunology Saposins modulate human invariant Natural Killer T cells self-reactivity and facilitate lipid exchange with CD1d molecules during antigen presentation  Mariolina Salio, Hemza Ghadbane, Omer Dushek, Dawn Shepherd, Jeremy Cypen, Uzi Gileadi, Michael C. Aichinger, Giorgio Napolitani, Xiaoyang Qi, P. Anton van der Merwe, Justyna Wojno, Natacha Veerapen, Liam R. Cox, Gurdyal S. Besra, Weiming Yuan, Peter Cresswell, and Vincenzo Cerundolo Beneficial innate signaling interference for antibacterial responses by a Toll-like receptor–mediated enhancement of the MKP-IRF3 axis Hideo Negishi, Kosuke Matsuki, Nobuyasu Endo, Hana Sarashina, Shoji Miki, Atsushi Matsuda, Keiko Fukazawa, Naoko Taguchi-Atarashi, Hiroaki Ikushima, Hideyuki Yanai, Junko Nishio, Kenya Honda, Yoichiro Fujioka, Yusuke Ohba, Tetsuo Noda, Shun'ichiro Taniguchi, Eisuke Nishida, Yongliang Zhang, Hongbo Chi, Richard A. Flavell, and Tadatsugu Taniguchi Rationally designed inhibitor targeting antigen-trimming aminopeptidases enhances antigen presentation and cytotoxic T-cell responses Efthalia Zervoudi, Emmanuel Saridakis, James R. Birtley, Sergey S. Seregin, Emma Reeves, Paraskevi Kokkala, Yasser A. Aldhamen, Andrea Amalfitano, Irene M. Mavridis, Edward James, Dimitris Georgiadis, and Efstratios Stratikos Dimerization of LTβR by LTα1β2 is necessary and sufficient for signal transduction  Jawahar Sudhamsu, JianPing Yin, Eugene Y. Chiang, Melissa A. Starovasnik, Jane L. Grogan, and Sarah G. Hymowitz Nanoparticle conjugation of CpG enhances adjuvancy for cellular immunity and memory recall at low dose  Alexandre de Titta, Marie Ballester, Ziad Julier, Chiara Nembrini, Laura Jeanbart, André J. van der Vlies, Melody A. Swartz, and Jeffrey A. Hubbell Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling  Yoshiaki Enokizono, Hiroyuki Kumeta, Kenji Funami, Masataka Horiuchi, Joy Sarmiento, Kazuo Yamashita, Daron M. Standley, Misako Matsumoto, Tsukasa Seya, and Fuyuhiko Inagaki Medical Sciences Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets  Justin M. Drake, Nicholas A. Graham, John K. Lee, Tanya Stoyanova, Claire M. Faltermeier, Sudha Sud, Björn Titz, Jiaoti Huang, Kenneth J. Pienta, Thomas G. Graeber, and Owen N. Witte NFATc1 and NFATc2 repress spontaneous osteoarthritis Matthew B. Greenblatt, Susan Y. Ritter, John Wright, Kelly Tsang, Dorothy Hu, Laurie H. Glimcher, and Antonios O. Aliprantis Loss of caspase-2 augments lymphomagenesis and enhances genomic instability in Atm-deficient mice Joseph Puccini, Sonia Shalini, Anne K. Voss, Magtouf Gatei, Claire H. Wilson, Devendra K. Hiwase, Martin F. Lavin, Loretta Dorstyn, and Sharad Kumar Microbiology Coxiella burnetii effector protein subverts clathrin-mediated vesicular trafficking for pathogen vacuole biogenesis Charles L. Larson, Paul A. Beare, Dale Howe, and Robert A. Heinzen Nuclear import of APOBEC3F-labeled HIV-1 preintegration complexes  Ryan C. Burdick, Wei-Shau Hu, and Vinay K. Pathak Genetic regulation of vesiculogenesis and immunomodulation in Mycobacterium tuberculosis  Poonam Rath, Chengdong Huang, Tao Wang, Tianzhi Wang, Huilin Li, Rafael Prados-Rosales, Olivier Elemento, Arturo Casadevall, and Carl F. Nathan Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism Matthew J. Sullivan, Andrew J. Gates, Corinne Appia-Ayme, Gary Rowley, and David J. Richardson Chronic exposure to arsenic in drinking water can lead to resistance to antimonial drugs in a mouse model of visceral leishmaniasis   Meghan R. Perry, Susan Wyllie, Andrea Raab, Joerg Feldmann, and Alan H. Fairlamb Neuroscience Estimating functional connectivity in an electrically coupled interneuron network Pepe Alcami and Alain Marty Neural mechanisms of reactivation-induced updating that enhance and distort memory  Peggy L. St. Jacques, Christopher Olm, and Daniel L. Schacter Inositol polyphosphate multikinase is a coactivator for serum response factor-dependent induction of immediate early genes Eunha Kim, Richa Tyagi, Joo-Young Lee, Jina Park, Young-ran Kim, Jiyoon Beon, Po Yu Chen, Jiyoung Y. Cha, Solomon H. Snyder, and Seyun Kim Causal interactions between fronto-parietal central executive and default-mode networks in humans Ashley C. Chen, Desmond J. Oathes, Catie Chang, Travis Bradley, Zheng-Wei Zhou, Leanne M. Williams, Gary H. Glover, Karl Deisseroth, and Amit Etkin A multiplicative reinforcement learning model capturing learning dynamics and interindividual variability in mice Brice Bathellier, Sui Poh Tee, Christina Hrovat, and Simon Rumpel Plant Biology Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions Nabil Elrouby, Mitzi Villajuana Bonequi, Aimone Porri, and George Coupland Three proteins mediate import of transit sequence-less precursors into the inner envelope of chloroplasts in Arabidopsis thaliana  Claudia Rossig, Christiane Reinbothe, John Gray, Oscar Valdes, Diter von Wettstein, and Steffen Reinbothe Systems Biology Reconstruction of protein networks from an atlas of maize seed proteotypes Justin W. Walley, Zhouxin Shen, Ryan Sartor, Kevin J. Wu, Joshua Osborn, Laurie G. Smith, and Steven P. Briggs Corrections Correction for Carvalho et al., Cell-sized liposomes reveal how actomyosin cortical tension drives shape change Correction for Luo et al., Unique insights into maternal mitochondrial inheritance in mice Correction for Vosler et al., Ischemia-induced calpain activation causes eukaryotic (translation) initiation factor 4G1 (eIF4GI) degradation, protein synthesis inhibition, and neuronal death Correction for Bart et al., High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner This message was sent to pascal.alter@gmail.com.  425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2013 by the National Academy of Sciences