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Fwd: PNAS Section Alert for March 29, 2016

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From: <pnas-mailer@alerts.highwire.org>
Date: Wed, Mar 30, 2016 at 5:56 AM
Subject: PNAS Section Alert for March 29, 2016
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences
Genetics
Major spliceosome defects cause male infertility and are associated with nonobstructive azoospermia in humans
Hao Wu, Liwei Sun, Yang Wen, Yujuan Liu, Jun Yu, Feiyu Mao, Ya Wang, Chao Tong, Xuejiang Guo, Zhibin Hu, Jiahao Sha, Mingxi Liu, and Laixin Xia
No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini Open Access Article
Georgios Koutsovoulos, Sujai Kumar, Dominik R. Laetsch, Lewis Stevens, Jennifer Daub, Claire Conlon, Habib Maroon, Fran Thomas, Aziz A. Aboobaker, and Mark Blaxter
Enhanced gene targeting to evaluate Lynch syndrome alterations
Richard Fishel and Christopher D. Heinen

Anthropology
Hunted gazelles evidence cooling, but not drying, during the Younger Dryas in the southern Levant
Gideon Hartman, Ofer Bar-Yosef, Alex Brittingham, Leore Grosman, and Natalie D. Munro

Immunology and Inflammation
Oral activity of a nature-derived cyclic peptide for the treatment of multiple sclerosis Open Access Article
Kathrin Thell, Roland Hellinger, Emine Sahin, Paul Michenthaler, Markus Gold-Binder, Thomas Haider, Mario Kuttke, Zita Liutkevičiūtė, Ulf Göransson, Carsten Gründemann, Gernot Schabbauer, and Christian W. Gruber
Defects in lysosomal maturation facilitate the activation of innate sensors in systemic lupus erythematosus
Andrew J. Monteith, SunAh Kang, Eric Scott, Kai Hillman, Zenon Rajfur, Ken Jacobson, M. Joseph Costello, and Barbara J. Vilen

Applied Biological Sciences
Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes Open Access Article
Andrew Brantley Hall, Philippos-Aris Papathanos, Atashi Sharma, Changde Cheng, Omar S. Akbari, Lauren Assour, Nicholas H. Bergman, Alessia Cagnetti, Andrea Crisanti, Tania Dottorini, Elisa Fiorentini, Roberto Galizi, Jonathan Hnath, Xiaofang Jiang, Sergey Koren, Tony Nolan, Diane Radune, Maria V. Sharakhova, Aaron Steele, Vladimir A. Timoshevskiy, Nikolai Windbichler, Simo Zhang, Matthew W. Hahn, Adam M. Phillippy, Scott J. Emrich, Igor V. Sharakhov, Zhijian Jake Tu, and Nora J. Besansky
[18F]CFA as a clinically translatable probe for PET imaging of deoxycytidine kinase activity
Woosuk Kim, Thuc M. Le, Liu Wei, Soumya Poddar, Jimmy Bazzy, Xuemeng Wang, Nhu T. Uong, Evan R. Abt, Joseph R. Capri, Wayne R. Austin, Juno S. Van Valkenburgh, Dalton Steele, Raymond M. Gipson, Roger Slavik, Anthony E. Cabebe, Thotsophon Taechariyakul, Shahriar S. Yaghoubi, Jason T. Lee, Saman Sadeghi, Arnon Lavie, Kym F. Faull, Owen N. Witte, Timothy R. Donahue, Michael E. Phelps, Harvey R. Herschman, Ken Herrmann, Johannes Czernin, and Caius G. Radu

Applied Mathematics

Medical Sciences
Reporter nanoparticle that monitors its anticancer efficacy in real time
Ashish Kulkarni, Poornima Rao, Siva Natarajan, Aaron Goldman, Venkata S. Sabbisetti, Yashika Khater, Navya Korimerla, Vineethkrishna Chandrasekar, Raghunath A. Mashelkar, and Shiladitya Sengupta
Anabolic actions of Notch on mature bone
Peng Liu, Yilin Ping, Meng Ma, Demao Zhang, Connie Liu, Samir Zaidi, Song Gao, Yaoting Ji, Feng Lou, Fanyuan Yu, Ping Lu, Agnes Stachnik, Mingru Bai, Chengguo Wei, Liaoran Zhang, Ke Wang, Rong Chen, Maria I. New, David W. Rowe, Tony Yuen, Li Sun, and Mone Zaidi
Stimuli-responsive clustered nanoparticles for improved tumor penetration and therapeutic efficacy
Hong-Jun Li, Jin-Zhi Du, Xiao-Jiao Du, Cong-Fei Xu, Chun-Yang Sun, Hong-Xia Wang, Zhi-Ting Cao, Xian-Zhu Yang, Yan-Hua Zhu, Shuming Nie, and Jun Wang
Myofibroblasts are distinguished from activated skin fibroblasts by the expression of AOC3 and other associated markers
Lin-ting Hsia, Neil Ashley, Djamila Ouaret, Lai Mun Wang, Jennifer Wilding, and Walter F. Bodmer
Engineering a long-acting, potent GLP-1 analog for microstructure-based transdermal delivery Open Access Article
Peng-Yu Yang, Huafei Zou, Elizabeth Chao, Lance Sherwood, Vanessa Nunez, Michael Keeney, Esi Ghartey-Tagoe, Zhongli Ding, Herlinda Quirino, Xiaozhou Luo, Gus Welzel, Guohua Chen, Parminder Singh, Ashley K. Woods, Peter G. Schultz, and Weijun Shen
Endocrine vasculatures are preferable targets of an antitumor ineffective low dose of anti-VEGF therapy
Yin Zhang, Yunlong Yang, Kayoko Hosaka, Guichun Huang, Jingwu Zang, Fang Chen, Yun Zhang, Nilesh J. Samani, and Yihai Cao
Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone Open Access Article
Li-Qun Fang, Yang Yang, Jia-Fu Jiang, Hong-Wu Yao, David Kargbo, Xin-Lou Li, Bao-Gui Jiang, Brima Kargbo, Yi-Gang Tong, Ya-Wei Wang, Kun Liu, Abdul Kamara, Foday Dafae, Alex Kanu, Rui-Ruo Jiang, Ye Sun, Ruo-Xi Sun, Wan-Jun Chen, Mai-Juan Ma, Natalie E. Dean, Harold Thomas, Ira M. Longini Jr., M. Elizabeth Halloran, and Wu-Chun Cao
S-nitrosation of proteins relevant to Alzheimer's disease during early stages of neurodegeneration Open Access Article
Uthpala Seneviratne, Alexi Nott, Vadiraja B. Bhat, Kodihalli C. Ravindra, John S. Wishnok, Li-Huei Tsai, and Steven R. Tannenbaum

Applied Physical Sciences
Modulation of nitrogen vacancy charge state and fluorescence in nanodiamonds using electrochemical potential Open Access Article
Sinan Karaveli, Ophir Gaathon, Abraham Wolcott, Reyu Sakakibara, Or A. Shemesh, Darcy S. Peterka, Edward S. Boyden, Jonathan S. Owen, Rafael Yuste, and Dirk Englund

Microbiology
Output-driven feedback system control platform optimizes combinatorial therapy of tuberculosis using a macrophage cell culture model
Aleidy Silva, Bai-Yu Lee, Daniel L. Clemens, Theodore Kee, Xianting Ding, Chih-Ming Ho, and Marcus A. Horwitz
Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B
Tzviya Zeev-Ben-Mordehai, Daven Vasishtan, Anna Hernández Durán, Benjamin Vollmer, Paul White, Arun Prasad Pandurangan, C. Alistair Siebert, Maya Topf, and Kay Grünewald

Astronomy
Turbulent dynamo in a collisionless plasma
François Rincon, Francesco Califano, Alexander A. Schekochihin, and Francesco Valentini
Magnetic field evolution in magnetar crusts through three-dimensional simulations
Konstantinos N. Gourgouliatos, Toby S. Wood, and Rainer Hollerbach

Neuroscience
Intrathecal gene therapy rescues a model of demyelinating peripheral neuropathy
Alexia Kagiava, Irene Sargiannidou, George Theophilidis, Christos Karaiskos, Jan Richter, Stavros Bashiardes, Natasa Schiza, Marianna Nearchou, Christina Christodoulou, Steven S. Scherer, and Kleopas A. Kleopa
Mixing and matching TREK/TRAAK subunits generate heterodimeric K2P channels with unique properties
Sandy Blin, Ismail Ben Soussia, Eun-Jin Kim, Frédéric Brau, Dawon Kang, Florian Lesage, and Delphine Bichet
Heterodimerization within the TREK channel subfamily produces a diverse family of highly regulated potassium channels
Joshua Levitz, Perrine Royal, Yannick Comoglio, Brigitte Wdziekonski, Sébastien Schaub, Daniel M. Clemens, Ehud Y. Isacoff, and Guillaume Sandoz
Paclitaxel-induced epithelial damage and ectopic MMP-13 expression promotes neurotoxicity in zebrafish Open Access Article
Thomas S. Lisse, Leah J. Middleton, Adriana D. Pellegrini, Paige B. Martin, Emily L. Spaulding, Olivia Lopes, Elizabeth A. Brochu, Erin V. Carter, Ashley Waldron, and Sandra Rieger
Dopamine synapse is a neuroligin-2–mediated contact between dopaminergic presynaptic and GABAergic postsynaptic structures
Motokazu Uchigashima, Toshihisa Ohtsuka, Kazuto Kobayashi, and Masahiko Watanabe

Biochemistry
Host–parasite oscillation dynamics and evolution in a compartmentalized RNA replication system
Yohsuke Bansho, Taro Furubayashi, Norikazu Ichihashi, and Tetsuya Yomo
Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe
Rahul Jaiswal, Malay Choudhury, Shamsu Zaman, Samarendra Singh, Vishaka Santosh, Deepak Bastia, and Carlos R. Escalante
Individual variability in human blood metabolites identifies age-related differences Open Access Article Inaugural Article
Romanas Chaleckis, Itsuo Murakami, Junko Takada, Hiroshi Kondoh, and Mitsuhiro Yanagida
Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles
Jing Sun, Xi Jiang, Reidar Lund, Kenneth H. Downing, Nitash P. Balsara, and Ronald N. Zuckermann
S-nitrosation of proteins relevant to Alzheimer's disease during early stages of neurodegeneration Open Access Article
Uthpala Seneviratne, Alexi Nott, Vadiraja B. Bhat, Kodihalli C. Ravindra, John S. Wishnok, Li-Huei Tsai, and Steven R. Tannenbaum

Biophysics and Computational Biology
Surface force measurements and simulations of mussel-derived peptide adhesives on wet organic surfaces
Zachary A. Levine, Michael V. Rapp, Wei Wei, Ryan Gotchy Mullen, Chun Wu, Gül H. Zerze, Jeetain Mittal, J. Herbert Waite, Jacob N. Israelachvili, and Joan-Emma Shea
Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation
Chun-Xiao Song, Jiajie Diao, Axel T. Brunger, and Stephen R. Quake
Stokes trap for multiplexed particle manipulation and assembly using fluidics
Anish Shenoy, Christopher V. Rao, and Charles M. Schroeder
Discrete gene replication events drive coupling between the cell cycle and circadian clocks Open Access Article
Joris Paijmans, Mark Bosman, Pieter Rein ten Wolde, and David K. Lubensky
Measuring and modeling diffuse scattering in protein X-ray crystallography Open Access Article
Andrew H. Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S. Brewster, Nicholas K. Sauter, James S. Fraser, and Michael E. Wall

Physics
Electric field-induced superconducting transition of insulating FeSe thin film at 35 K
Kota Hanzawa, Hikaru Sato, Hidenori Hiramatsu, Toshio Kamiya, and Hideo Hosono

Cell Biology
Modeling and analysis of collective cell migration in an in vivo three-dimensional environment
Danfeng Cai, Wei Dai, Mohit Prasad, Junjie Luo, Nir S. Gov, and Denise J. Montell
CRF binding protein facilitates the presence of CRF type 2α receptor on the cell surface
Paula G. Slater, Cledi A. Cerda, Luis A. Pereira, María E. Andrés, and Katia Gysling

Physiology
Rethinking progesterone regulation of female reproductive cyclicity
Kaiyu Kubota, Wei Cui, Pramod Dhakal, Michael W. Wolfe, M. A. Karim Rumi, Jay L. Vivian, Katherine F. Roby, and Michael J. Soares

Chemistry
Oral activity of a nature-derived cyclic peptide for the treatment of multiple sclerosis Open Access Article
Kathrin Thell, Roland Hellinger, Emine Sahin, Paul Michenthaler, Markus Gold-Binder, Thomas Haider, Mario Kuttke, Zita Liutkevičiūtė, Ulf Göransson, Carsten Gründemann, Gernot Schabbauer, and Christian W. Gruber
Engineering titania nanostructure to tune and improve its photocatalytic activity
Matteo Cargnello, Tiziano Montini, Sergey Y. Smolin, Jacqueline B. Priebe, Juan J. Delgado Jaén, Vicky V. T. Doan-Nguyen, Ian S. McKay, Jay A. Schwalbe, Marga-Martina Pohl, Thomas R. Gordon, Yupeng Lu, Jason B. Baxter, Angelika Brückner, Paolo Fornasiero, and Christopher B. Murray
Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles
Jing Sun, Xi Jiang, Reidar Lund, Kenneth H. Downing, Nitash P. Balsara, and Ronald N. Zuckermann
Engineering a long-acting, potent GLP-1 analog for microstructure-based transdermal delivery Open Access Article
Peng-Yu Yang, Huafei Zou, Elizabeth Chao, Lance Sherwood, Vanessa Nunez, Michael Keeney, Esi Ghartey-Tagoe, Zhongli Ding, Herlinda Quirino, Xiaozhou Luo, Gus Welzel, Guohua Chen, Parminder Singh, Ashley K. Woods, Peter G. Schultz, and Weijun Shen

Plant Biology
GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement
Yukari Nagatoshi, Nobutaka Mitsuda, Maki Hayashi, Shin-ichiro Inoue, Eiji Okuma, Akihiro Kubo, Yoshiyuki Murata, Mitsunori Seo, Hikaru Saji, Toshinori Kinoshita, and Masaru Ohme-Takagi

Earth, Atmospheric, and Planetary Sciences
Markedly enhanced absorption and direct radiative forcing of black carbon under polluted urban environments Open Access Article
Jianfei Peng, Min Hu, Song Guo, Zhuofei Du, Jing Zheng, Dongjie Shang, Misti Levy Zamora, Limin Zeng, Min Shao, Yu-Sheng Wu, Jun Zheng, Yuan Wang, Crystal R. Glen, Donald R. Collins, Mario J. Molina, and Renyi Zhang
Hunted gazelles evidence cooling, but not drying, during the Younger Dryas in the southern Levant
Gideon Hartman, Ofer Bar-Yosef, Alex Brittingham, Leore Grosman, and Natalie D. Munro

Psychological and Cognitive Sciences
Dominant, open nonverbal displays are attractive at zero-acquaintance
Tanya Vacharkulksemsuk, Emily Reit, Poruz Khambatta, Paul W. Eastwick, Eli J. Finkel, and Dana R. Carney
Small-scale societies exhibit fundamental variation in the role of intentions in moral judgment Open Access Article
H. Clark Barrett, Alexander Bolyanatz, Alyssa N. Crittenden, Daniel M. T. Fessler, Simon Fitzpatrick, Michael Gurven, Joseph Henrich, Martin Kanovsky, Geoff Kushnick, Anne Pisor, Brooke A. Scelza, Stephen Stich, Chris von Rueden, Wanying Zhao, and Stephen Laurence

Ecology
Conditional vulnerability of plant diversity to atmospheric nitrogen deposition across the United States
Samuel M. Simkin, Edith B. Allen, William D. Bowman, Christopher M. Clark, Jayne Belnap, Matthew L. Brooks, Brian S. Cade, Scott L. Collins, Linda H. Geiser, Frank S. Gilliam, Sarah E. Jovan, Linda H. Pardo, Bethany K. Schulz, Carly J. Stevens, Katharine N. Suding, Heather L. Throop, and Donald M. Waller
Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world Open Access Article
Pamela P. Martinez, Aaron A. King, Mohammad Yunus, A. S. G. Faruque, and Mercedes Pascual
Predation risk drives social complexity in cooperative breeders
Frank Groenewoud, Joachim Gerhard Frommen, Dario Josi, Hirokazu Tanaka, Arne Jungwirth, and Michael Taborsky

Social Sciences
Rise, stagnation, and rise of Danish women's life expectancy Open Access Article
Rune Lindahl-Jacobsen, Roland Rau, Bernard Jeune, Vladimir Canudas-Romo, Adam Lenart, Kaare Christensen, and James W. Vaupel

Economic Sciences
Testing theories of financial decision making
Christopher P. Chambers, Federico Echenique, and Kota Saito

Engineering
Reporter nanoparticle that monitors its anticancer efficacy in real time
Ashish Kulkarni, Poornima Rao, Siva Natarajan, Aaron Goldman, Venkata S. Sabbisetti, Yashika Khater, Navya Korimerla, Vineethkrishna Chandrasekar, Raghunath A. Mashelkar, and Shiladitya Sengupta
Stokes trap for multiplexed particle manipulation and assembly using fluidics
Anish Shenoy, Christopher V. Rao, and Charles M. Schroeder

Sustainability Science
Global fishery prospects under contrasting management regimes Open Access Article
Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland
Global fishery prospects under contrasting management regimes Open Access Article
Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland
Global fishery prospects under contrasting management regimes
Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland
Land-use policies and corporate investments in agriculture in the Gran Chaco and Chiquitano Open Access Article
Yann le Polain de Waroux, Rachael D. Garrett, Robert Heilmayr, and Eric F. Lambin

Environmental Sciences
Global fishery prospects under contrasting management regimes Open Access Article
Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland
Global fishery prospects under contrasting management regimes Open Access Article
Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland
Global fishery prospects under contrasting management regimes
Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland
Coastal landforms and accumulation of mangrove peat increase carbon sequestration and storage Open Access Article
Paula Ezcurra, Exequiel Ezcurra, Pedro P. Garcillán, Matthew T. Costa, and Octavio Aburto-Oropeza
Measurement of Fukushima-related radioactive contamination in aquatic species
Mark P. Little, Richard Wakeford, André Bouville, and Steven L. Simon

Evolution
Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides
William G. Alexander, Jennifer H. Wisecaver, Antonis Rokas, and Chris Todd Hittinger

In This Issue

Letters and Replies

Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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