Fwd: PNAS Table of Contents for 29 March 2016; Vol. 113, No. 13

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Proceedings of the National Academy of Sciences 29 March 2016; Vol. 113, No. 13 This Week in PNAS In This Issue Letters (Online Only) Polygyny and child health revisited Matthias Rieger and Natascha Wagner Reply to Rieger and Wagner: Context matters when studying purportedly harmful cultural practices David W. Lawson, Susan James, Esther Ngadaya, Bernard Ngowi, Sayoki G. M. Mfinanga, and Monique Borgerhoff Mulder Changing fisheries productivity and food security Cody S. Szuwalski Reply to Szuwalski: Recognizing ecological income inequality in the ocean Gregory L. Britten, Michael Dowd, and Boris Worm Opinion Opinion: A new paradigm for regulating genetically engineered animals that are used as food  J. D. Murray and E. A. Maga Leading scientists discuss current issues. Retrospective Alfred Gilman: Intrepid, committed scientist Henry R. Bourne Commentaries A role for iron deficiency in dopaminergic neurodegeneration Yvette Y. Yien and Barry H. Paw Drilling and modeling studies expose Antarctica's Miocene secrets Amelia E. Shevenell Tuning in by tuning out distractions Kirsten C. S. Adam and Edward K. Vogel PNAS Plus Significance Statements PNAS Plus Significance Statements Brief statements written by the authors about the significance of their papers. Physical Sciences Applied Physical Sciences Ultrahigh-pressure polyamorphism in GeO2 glass with coordination number >6 Yoshio Kono, Curtis Kenney-Benson, Daijo Ikuta, Yuki Shibazaki, Yanbin Wang, and Guoyin Shen Breaking the diffraction limit of light-sheet fluorescence microscopy by RESOLFT   Patrick Hoyer, Gustavo de Medeiros, Bálint Balázs, Nils Norlin, Christina Besir, Janina Hanne, Hans-Georg Kräusslich, Johann Engelhardt, Steffen J. Sahl, Stefan W. Hell, and Lars Hufnagel Snapshot of sequential SNARE assembling states between membranes shows that N-terminal transient assembly initializes fusion Yong Jian Wang, Feng Li, Nicolas Rodriguez, Xavier Lafosse, Christine Gourier, Eric Perez, and Frederic Pincet Discovery of fairy circles in Australia supports self-organization theory Stephan Getzin, Hezi Yizhaq, Bronwyn Bell, Todd E. Erickson, Anthony C. Postle, Itzhak Katra, Omer Tzuk, Yuval R. Zelnik, Kerstin Wiegand, Thorsten Wiegand, and Ehud Meron Earth, Atmospheric, and Planetary Sciences New tyrannosaur from the mid-Cretaceous of Uzbekistan clarifies evolution of giant body sizes and advanced senses in tyrant dinosaurs Stephen L. Brusatte, Alexander Averianov, Hans-Dieter Sues, Amy Muir, and Ian B. Butler Antarctic ice sheet sensitivity to atmospheric CO2 variations in the early to mid-Miocene  Richard Levy, David Harwood, Fabio Florindo, Francesca Sangiorgi, Robert Tripati, Hilmar von Eynatten, Edward Gasson, Gerhard Kuhn, Aradhna Tripati, Robert DeConto, Christopher Fielding, Brad Field, Nicholas Golledge, Robert McKay, Timothy Naish, Matthew Olney, David Pollard, Stefan Schouten, Franco Talarico, Sophie Warny, Veronica Willmott, Gary Acton, Kurt Panter, Timothy Paulsen, Marco Taviani, and SMS Science Team Dynamic Antarctic ice sheet during the early to mid-Miocene  Edward Gasson, Robert M. DeConto, David Pollard, and Richard H. Levy Carbon isotopes characterize rapid changes in atmospheric carbon dioxide during the last deglaciation  Thomas K. Bauska, Daniel Baggenstos, Edward J. Brook, Alan C. Mix, Shaun A. Marcott, Vasilii V. Petrenko, Hinrich Schaefer, Jeffrey P. Severinghaus, and James E. Lee Engineering Breaking temporal symmetries for emission and absorption Yakir Hadad, Jason C. Soric, and Andrea Alu Environmental Sciences Galápagos hydroclimate of the Common Era from paired microalgal and mangrove biomarker 2H/1H values Daniel B. Nelson and Julian P. Sachs Physics Hierarchy and extremes in selections from pools of randomized proteins Sébastien Boyer, Dipanwita Biswas, Ananda Kumar Soshee, Natale Scaramozzino, Clément Nizak, and Olivier Rivoire Social Sciences Economic Sciences Impacts of classifying New York City students as overweight Douglas Almond, Ajin Lee, and Amy Ellen Schwartz Psychological and Cognitive Sciences Infants ask for help when they know they don't know  Louise Goupil, Margaux Romand-Monnier, and Sid Kouider Biological Sciences Applied Biological Sciences Optogenetic skeletal muscle-powered adaptive biological machines Ritu Raman, Caroline Cvetkovic, Sebastien G. M. Uzel, Randall J. Platt, Parijat Sengupta, Roger D. Kamm, and Rashid Bashir Biochemistry Stability of the human polymerase δ holoenzyme and its implications in lagging strand DNA synthesis Mark Hedglin, Binod Pandey, and Stephen J. Benkovic Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters Jared T. Winkelman, Pete Chandrangsu, Wilma Ross, and Richard L. Gourse Acetyl-CoA carboxylase inhibition by ND-630 reduces hepatic steatosis, improves insulin sensitivity, and modulates dyslipidemia in rats  Geraldine Harriman, Jeremy Greenwood, Sathesh Bhat, Xinyi Huang, Ruiying Wang, Debamita Paul, Liang Tong, Asish K. Saha, William F. Westlin, Rosana Kapeller, and H. James Harwood Jr. Aurone synthase is a catechol oxidase with hydroxylase activity and provides insights into the mechanism of plant polyphenol oxidases  Christian Molitor, Stephan Gerhard Mauracher, and Annette Rompel TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle  Sarah Schulz, Andreas Gietl, Katherine Smollett, Philip Tinnefeld, Finn Werner, and Dina Grohmann Inositol hexakisphosphate (IP6) generated by IP5K mediates cullin-COP9 signalosome interactions and CRL function Paul C. Scherer, Yan Ding, Zhiqing Liu, Jing Xu, Haibin Mao, James C. Barrow, Ning Wei, Ning Zheng, Solomon H. Snyder, and Feng Rao Molecular basis for inhibition of AcrB multidrug efflux pump by novel and powerful pyranopyridine derivatives Hanno Sjuts, Attilio V. Vargiu, Steven M. Kwasny, Son T. Nguyen, Hong-Suk Kim, Xiaoyuan Ding, Alina R. Ornik, Paolo Ruggerone, Terry L. Bowlin, Hiroshi Nikaido, Klaas M. Pos, and Timothy J. Opperman BRCA2 regulates DMC1-mediated recombination through the BRC repeats  Juan S. Martinez, Catharina von Nicolai, Taeho Kim, Åsa Ehlén, Alexander V. Mazin, Stephen C. Kowalczykowski, and Aura Carreira Biosynthetic investigation of phomopsins reveals a widespread pathway for ribosomal natural products in Ascomycetes Wei Ding, Wan-Qiu Liu, Youli Jia, Yongzhen Li, Wilfred A. van der Donk, and Qi Zhang Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1–F-box interface  Maryna Gorelik, Stephen Orlicky, Maria A. Sartori, Xiaojing Tang, Edyta Marcon, Igor Kurinov, Jack F. Greenblatt, Mike Tyers, Jason Moffat, Frank Sicheri, and Sachdev S. Sidhu Biophysics and Computational Biology Identification of tissue-specific cell death using methylation patterns of circulating DNA Roni Lehmann-Werman, Daniel Neiman, Hai Zemmour, Joshua Moss, Judith Magenheim, Adi Vaknin-Dembinsky, Sten Rubertsson, Bengt Nellgård, Kaj Blennow, Henrik Zetterberg, Kirsty Spalding, Michael J. Haller, Clive H. Wasserfall, Desmond A. Schatz, Carla J. Greenbaum, Craig Dorrell, Markus Grompe, Aviad Zick, Ayala Hubert, Myriam Maoz, Volker Fendrich, Detlef K. Bartsch, Talia Golan, Shmuel A. Ben Sasson, Gideon Zamir, Aharon Razin, Howard Cedar, A. M. James Shapiro, Benjamin Glaser, Ruth Shemer, and Yuval Dor Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets  Mina Fazlollahi, Ivor Muroff, Eunjee Lee, Helen C. Causton, and Harmen J. Bussemaker Force-producing ADP state of myosin bound to actin  Sarah F. Wulf, Virginie Ropars, Setsuko Fujita-Becker, Marco Oster, Goetz Hofhaus, Leonardo G. Trabuco, Olena Pylypenko, H. Lee Sweeney, Anne M. Houdusse, and Rasmus R. Schröder Recognition of the disordered p53 transactivation domain by the transcriptional adapter zinc finger domains of CREB-binding protein Alexander S. Krois, Josephine C. Ferreon, Maria A. Martinez-Yamout, H. Jane Dyson, and Peter E. Wright Hierarchy and extremes in selections from pools of randomized proteins Sébastien Boyer, Dipanwita Biswas, Ananda Kumar Soshee, Natale Scaramozzino, Clément Nizak, and Olivier Rivoire Snapshot of sequential SNARE assembling states between membranes shows that N-terminal transient assembly initializes fusion Yong Jian Wang, Feng Li, Nicolas Rodriguez, Xavier Lafosse, Christine Gourier, Eric Perez, and Frederic Pincet Intramolecular allosteric communication in dopamine D2 receptor revealed by evolutionary amino acid covariation  Yun-Min Sung, Angela D. Wilkins, Gustavo J. Rodriguez, Theodore G. Wensel, and Olivier Lichtarge Cell Biology A RhoA and Rnd3 cycle regulates actin reassembly during membrane blebbing Kana Aoki, Fumiyo Maeda, Tomoya Nagasako, Yuki Mochizuki, Seiichi Uchida, and Junichi Ikenouchi Mitochondrial calcium uniporter regulator 1 (MCUR1) regulates the calcium threshold for the mitochondrial permeability transition Dipayan Chaudhuri, Daniel J. Artiga, Sunday A. Abiria, and David E. Clapham Re-evaluation of the roles of DROSHA, Exportin 5, and DICER in microRNA biogenesis  Young-Kook Kim, Boseon Kim, and V. Narry Kim Developmental Biology Sp5 and Sp8 recruit β-catenin and Tcf1-Lef1 to select enhancers to activate Wnt target gene transcription Mark W. Kennedy, Ravindra B. Chalamalasetty, Sara Thomas, Robert J. Garriock, Parthav Jailwala, and Terry P. Yamaguchi Ecology Discovery of fairy circles in Australia supports self-organization theory Stephan Getzin, Hezi Yizhaq, Bronwyn Bell, Todd E. Erickson, Anthony C. Postle, Itzhak Katra, Omer Tzuk, Yuval R. Zelnik, Kerstin Wiegand, Thorsten Wiegand, and Ehud Meron Biotic homogenization can decrease landscape-scale forest multifunctionality Fons van der Plas, Pete Manning, Santiago Soliveres, Eric Allan, Michael Scherer-Lorenzen, Kris Verheyen, Christian Wirth, Miguel A. Zavala, Evy Ampoorter, Lander Baeten, Luc Barbaro, Jürgen Bauhus, Raquel Benavides, Adam Benneter, Damien Bonal, Olivier Bouriaud, Helge Bruelheide, Filippo Bussotti, Monique Carnol, Bastien Castagneyrol, Yohan Charbonnier, David Anthony Coomes, Andrea Coppi, Cristina C. Bestias, Seid Muhie Dawud, Hans De Wandeler, Timo Domisch, Leena Finér, Arthur Gessler, André Granier, Charlotte Grossiord, Virginie Guyot, Stephan Hättenschwiler, Hervé Jactel, Bogdan Jaroszewicz, François-xavier Joly, Tommaso Jucker, Julia Koricheva, Harriet Milligan, Sandra Mueller, Bart Muys, Diem Nguyen, Martina Pollastrini, Sophia Ratcliffe, Karsten Raulund-Rasmussen, Federico Selvi, Jan Stenlid, Fernando Valladares, Lars Vesterdal, Dawid Zielínski, and Markus Fischer Conservation triage or injurious neglect in endangered species recovery  Leah R. Gerber Evolution New tyrannosaur from the mid-Cretaceous of Uzbekistan clarifies evolution of giant body sizes and advanced senses in tyrant dinosaurs Stephen L. Brusatte, Alexander Averianov, Hans-Dieter Sues, Amy Muir, and Ian B. Butler Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture Tom J. B. de Man, Jason E. Stajich, Christian P. Kubicek, Clotilde Teiling, Komal Chenthamara, Lea Atanasova, Irina S. Druzhinina, Natasha Levenkova, Stephanie S. L. Birnbaum, Seth M. Barribeau, Brooke A. Bozick, Garret Suen, Cameron R. Currie, and Nicole M. Gerardo Autocratic strategies for iterated games with arbitrary action spaces Alex McAvoy and Christoph Hauert Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis   Raphaël Méheust, Ehud Zelzion, Debashish Bhattacharya, Philippe Lopez, and Eric Bapteste Inbreeding depression across the lifespan in a wild mammal population  Jisca Huisman, Loeske E. B. Kruuk, Philip A. Ellis, Tim Clutton-Brock, and Josephine M. Pemberton Genetics Reevaluation of whether a soma–to–germ-line transformation extends lifespan in Caenorhabditis elegans Andrew Kekūpa'a Knutson, Andreas Rechtsteiner, and Susan Strome Immunology and Inflammation Detection, phenotyping, and quantification of antigen-specific T cells using a peptide-MHC dodecamer Jun Huang, Xun Zeng, Natalia Sigal, Peder J. Lund, Laura F. Su, Huang Huang, Yueh-hsiu Chien, and Mark M. Davis Medical Sciences Soluble (pro)renin receptor via β-catenin enhances urine concentration capability as a target of liver X receptor Xiaohan Lu, Fei Wang, Chuanming Xu, Sunny Soodvilai, Kexin Peng, Jiahui Su, Long Zhao, Kevin T. Yang, Yumei Feng, Shu-Feng Zhou, Jan-Åke Gustafsson, and Tianxin Yang Disrupted iron homeostasis causes dopaminergic neurodegeneration in mice   Pavle Matak, Andrija Matak, Sarah Moustafa, Dipendra K. Aryal, Eric J. Benner, William Wetsel, and Nancy C. Andrews Functional polymorphisms of macrophage migration inhibitory factor as predictors of morbidity and mortality of pneumococcal meningitis Athina Savva, Matthijs C. Brouwer, Thierry Roger, Mercedes Valls Serón, Didier Le Roy, Bart Ferwerda, Arie van der Ende, Pierre-Yves Bochud, Diederik van de Beek, and Thierry Calandra Exploring the surfaceome of Ewing sarcoma identifies a new and unique therapeutic target Jennifer Town, Helio Pais, Sally Harrison, Lucy F. Stead, Carole Bataille, Wilawan Bunjobpol, Jing Zhang, and Terence H. Rabbitts Spironolactone blocks Epstein–Barr virus production by inhibiting EBV SM protein function Dinesh Verma, Jacob Thompson, and Sankar Swaminathan Microbiology Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga Carmit Ziv, Sergey Malitsky, Alaa Othman, Shifra Ben-Dor, Yu Wei, Shuning Zheng, Asaph Aharoni, Thorsten Hornemann, and Assaf Vardi Diverse high-torque bacterial flagellar motors assemble wider stator rings using a conserved protein scaffold  Morgan Beeby, Deborah A. Ribardo, Caitlin A. Brennan, Edward G. Ruby, Grant J. Jensen, and David R. Hendrixson Recombinant thiopeptides containing noncanonical amino acids Xiaozhou Luo, Claudio Zambaldo, Tao Liu, Yuhan Zhang, Weimin Xuan, Chen Wang, Sean A. Reed, Peng-Yu Yang, Rongsheng E. Wang, Tsotne Javahishvili, Peter G. Schultz, and Travis S. Young Human mesenchymal stromal cells reduce influenza A H5N1-associated acute lung injury in vitro and in vivo  Michael C. W. Chan, Denise I. T. Kuok, Connie Y. H. Leung, Kenrie P. Y. Hui, Sophie A. Valkenburg, Eric H. Y. Lau, John M. Nicholls, Xiaohui Fang, Yi Guan, Jae W. Lee, Renee W. Y. Chan, Robert G. Webster, Michael A. Matthay, and J. S. Malik Peiris Bacteroides fragilis type VI secretion systems use novel effector and immunity proteins to antagonize human gut Bacteroidales species Maria Chatzidaki-Livanis, Naama Geva-Zatorsky, and Laurie E. Comstock Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator Katsumi Imada, Tohru Minamino, Yumiko Uchida, Miki Kinoshita, and Keiichi Namba Human symbionts inject and neutralize antibacterial toxins to persist in the gut  Aaron G. Wexler, Yiqiao Bao, John C. Whitney, Louis-Marie Bobay, Joao B. Xavier, Whitman B. Schofield, Natasha A. Barry, Alistair B. Russell, Bao Q. Tran, Young Ah Goo, David R. Goodlett, Howard Ochman, Joseph D. Mougous, and Andrew L. Goodman Neuroscience Phasic, suprathreshold excitation and sustained inhibition underlie neuronal selectivity for short-duration sounds Rishi K. Alluri, Gary J. Rose, Jessica L. Hanson, Christopher J. Leary, Gustavo A. Vasquez-Opazo, Jalina A. Graham, and Jeremy Wilkerson Four-dimensional maps of the human somatosensory system  Pietro Avanzini, Rouhollah O. Abdollahi, Ivana Sartori, Fausto Caruana, Veronica Pelliccia, Giuseppe Casaceli, Roberto Mai, Giorgio Lo Russo, Giacomo Rizzolatti, and Guy A. Orban New inducible genetic method reveals critical roles of GABA in the control of feeding and metabolism Fantao Meng, Yong Han, Dollada Srisai, Valery Belakhov, Monica Farias, Yong Xu, Richard D. Palmiter, Timor Baasov, and Qi Wu LSD1 modulates stress-evoked transcription of immediate early genes and emotional behavior  Francesco Rusconi, Barbara Grillo, Luisa Ponzoni, Silvia Bassani, Emanuela Toffolo, Leda Paganini, Alessandra Mallei, Daniela Braida, Maria Passafaro, Maurizio Popoli, Mariaelvina Sala, and Elena Battaglioli Temporally chimeric mice reveal flexibility of circadian period-setting in the suprachiasmatic nucleus  Nicola J. Smyllie, Johanna E. Chesham, Ryan Hamnett, Elizabeth S. Maywood, and Michael H. Hastings Pharmacology Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress  Qian Ren, Min Ma, Tamaki Ishima, Christophe Morisseau, Jun Yang, Karen M. Wagner, Ji-chun Zhang, Chun Yang, Wei Yao, Chao Dong, Mei Han, Bruce D. Hammock, and Kenji Hashimoto Truncated mu opioid GPCR variant involvement in opioid-dependent and opioid-independent pain modulatory systems within the CNS Gina F. Marrone, Steven G. Grinnell, Zhigang Lu, Grace C. Rossi, Valerie Le Rouzic, Jin Xu, Susruta Majumdar, Ying-Xian Pan, and Gavril W. Pasternak Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor  Min-Suk Song, Gyanendra Kumar, William R. Shadrick, Wei Zhou, Trushar Jeevan, Zhenmei Li, P. Jake Slavish, Thomas P. Fabrizio, Sun-Woo Yoon, Thomas R. Webb, Richard J. Webby, and Stephen W. White Physiology Biphasic regulation of InsP3 receptor gating by dual Ca2+ release channel BH3-like domains mediates Bcl-xL control of cell viability Jun Yang, Horia Vais, Wenen Gu, and J. Kevin Foskett Size and speed of the working stroke of cardiac myosin in situ Marco Caremani, Francesca Pinzauti, Massimo Reconditi, Gabriella Piazzesi, Ger J. M. Stienen, Vincenzo Lombardi, and Marco Linari Plant Biology Carnosic acid biosynthesis elucidated by a synthetic biology platform Codruta Ignea, Anastasia Athanasakoglou, Efstathia Ioannou, Panagiota Georgantea, Fotini A. Trikka, Sofia Loupassaki, Vassilios Roussis, Antonios M. Makris, and Sotirios C. Kampranis Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field  Fabrice Roux, Tristan Mary-Huard, Elise Barillot, Estelle Wenes, Lucy Botran, Stéphanie Durand, Romain Villoutreix, Marie-Laure Martin-Magniette, Christine Camilleri, and Françoise Budar Psychological and Cognitive Sciences Inability to suppress salient distractors predicts low visual working memory capacity  John M. Gaspar, Gregory J. Christie, David J. Prime, Pierre Jolicœur, and John J. McDonald Corrections (Online Only) Correction for Roberts et al., Continuity of mammalian fauna over the last 200,000 y in the Indian subcontinent Correction for Rodrigues et al., Biophysical principles predict fitness landscapes of drug resistance Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (...). Copyright © 2016 by the National Academy of Sciences